Balliau T, Duruflé H, Blanchet N, Blein-Nicolas M, Langlade NB, Zivy M. (2021) Proteomic data from leaves of twenty-four sunflower genotypes under water deficit. OCL, (28) 12
Bassignani A, Plancade S, Berland M, Blein-Nicolas M, Guillot A, Chevret D, Moritz C, Huet S, Rizkalla S, Clément K, Doré J, Langella O, Juste C. (2021) Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets. J Proteome Res, 3 (20) 1522-1534
Bednarz B, Millan-Oropeza A, Kotowska M, Świat M, Quispe Haro JJ, Henry C, Pawlik K. (2021) Coelimycin Synthesis Activatory Proteins Are Key Regulators of Specialized Metabolism and Precursor Flux in Streptomyces coelicolor A3(2). Front. Microbiol., (12)
Bossche TVD, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen M, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Reichl U, Renard BY, Schiebenhoefer H, Scryba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, Bergen M, Wilmes P, Wolf M, Martens L, Muth T. (2021) Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows. bioRxiv, () 2021.03.05.433915
Cui J, Davanture M, Lamade E, Zivy M, Tcherkez G. (2021) Plant low-K responses are partly due to Ca prevalence and the low-K biomarker putrescine does not protect from Ca side effects but acts as a metabolic regulator. Plant Cell Environ, 5 (44) 1565-1579
Daou M, Farfan Soto C, Majira A, Cézard L, Cottyn B, Pion F, Navarro D, Oliveira Correia L, Drula E, Record E, Raouche S, Baumberger S, Faulds CB. (2021) Fungal Treatment for the Valorization of Technical Soda Lignin. J Fungi (Basel), 1 (7)
Domenzain I, Sánchez B, Anton M, Kerkhoven EJ, Millán-Oropeza A, Henry C, Siewers V, Morrissey JP, Sonnenschein N, Nielsen J. (2021) Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0. bioRxiv, () 2021.03.05.433259
Douché T, Valot B, Balliau T, San Clemente H, Zivy M, Jamet E. (2021) Cell wall proteomic datasets of stems and leaves of Brachypodium distachyon. Data Brief, (35) 106818
Henriet C, Balliau T, Aimé D, Le Signor C, Kreplak J, Zivy M, Gallardo K, Vernoud V. (2021) Proteomics of developing pea seeds reveals a complex antioxidant network underlying the response to sulfur deficiency and water stress. Journal of Experimental Botany, 7 (72) 2611-2626
Langella O, Rusconi F. (2021) mineXpert2: Full-Depth Visualization and Exploration of MSn Mass Spectrometry Data. J. Am. Soc. Mass Spectrom., 4 (32) 1138-1141
Mateos-Hernández L, Pipová N, Allain E, Henry C, Rouxel C, Lagrée AC, Boulouis HJ, Valdés JJ, Alberdi P, de la Fuente J, Cabezas-Cruz A, Šimo L. (2021) Enlisting the Ixodes scapularis Embryonic ISE6 Cell Line to Investigate the Neuronal Basis of Tick—Pathogen Interactions. Pathogens, 1 (10) 70
Plancade S, Berland M, Blein-Nicolas M, Langella O, Bassignani A, Juste C. (2021) A combined test for feature selection on sparse metaproteomics data - alternative to missing value imputation. bioRxiv, () 2021.06.22.449387
Prola A, Blondelle J, Vandestienne A, Piquereau J, Denis RGP, Guyot S, Chauvin H, Mourier A, Maurer M, Henry C, Khadhraoui N, Gallerne C, Molinié T, Courtin G, Guillaud L, Gressette M, Solgadi A, Dumont F, Castel J, Ternacle J, Demarquoy J, Malgoyre A, Koulmann N, Derumeaux G, Giraud MF, Joubert F, Veksler V, Luquet S, Relaix F, Tiret L, Pilot-Storck F. (2021) Cardiolipin content controls mitochondrial coupling and energetic efficiency in muscle. Science Advances, 1 (7) eabd6322
Recorbet G, Calabrese S, Balliau T, Zivy M, Wipf D, Boller T, Courty PE. (2021) Proteome adaptations under contrasting soil phosphate regimes of Rhizophagus irregularis engaged in a common mycorrhizal network. Fungal Genet Biol, (147) 103517
Rusconi F. (2021) Free Open Source Software for Protein and Peptide Mass Spectrometry-based Science. Curr Protein Pept Sci, ()
Urrutia M, Blein‐Nicolas M, Prigent S, Bernillon S, Deborde C, Balliau T, Maucourt M, Jacob D, Ballias P, Bénard C, Sellier H, Gibon Y, Giauffret C, Zivy M, Moing A. (2021) Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis. Plant, Cell & Environment, 5 (44) 1504-1521
Yao H, Scornet D, Jam M, Hervé C, Potin P, Correia LO, Coelho SM, Cock JM. (2021) Biochemical characteristics of a diffusible factor that induces gametophyte to sporophyte switching in the brown alga Ectocarpus. Journal of Phycology, 3 (57) 742-753


Belouah I, Benard C, Denton A, Blein-Nicolas M, Balliau T, Teyssier E, Gallusci P, Bouchez O, Usadel B, Zivy M, Gibon Y, Colombie S. (2020) Transcriptomic and proteomic data in developing tomato fruit. Data Brief, (28) 105015
Ben Ali W, Navarro D, Kumar A, Drula E, Turbé-Doan A, Correia LO, Baumberger S, Bertrand E, Faulds CB, Henrissat B, Sciara G, Mechichi T, Record E. (2020) Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions. Marine Drugs, 9 (18) 461
Blein-Nicolas M, Negro SS, Balliau T, Welcker C, Cabrera-Bosquet L, Nicolas SD, Charcosset A, Zivy M. (2020) A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize. Genome Res, 11 (30) 1593-1604
Cazalé AC, Blanquet P, Henry C, Pouzet C, Bruand C, Meilhoc E. (2020) Tyrosine nitration of flagellins: a response of Sinorhizobium meliloti to nitrosative stress.. Appl. Environ. Microbiol., ()
Chetouhi C, Masseret E, Satta CT, Balliau T, Laabir M, Jean N. (2020) Intraspecific variability in membrane proteome, cell growth, and morphometry of the invasive marine neurotoxic dinoflagellate Alexandrium pacificum grown in metal-contaminated conditions. Sci. Total Environ., (715) 136834
Doughty TW, Domenzain I, Millan-Oropeza A, Montini N, Groot PA, Pereira R, Nielsen J, Henry C, Daran JMG, Siewers V, Morrissey JP. (2020) Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts. Nat Commun, 1 (11) 1-9
Dubrulle G, Picot A, Madec S, Corre E, Pawtowski A, Baroncelli R, Zivy M, Balliau T, Le Floch G, Pensec F. (2020) Deciphering the Infectious Process of Colletotrichum lupini in Lupin through Transcriptomic and Proteomic Analysis. Microorganisms, 10 (8)
Duruflé H, Ranocha P, Balliau T, Zivy M, Albenne C, Burlat V, Déjean S, Jamet E, Dunand C. (2020) An integrative Study Showing the Adaptation to Sub-Optimal Growth Conditions of Natural Populations of Arabidopsis thaliana: A Focus on Cell Wall Changes. Cells, 10 (9)
Huang CY, Gonzalez-Lopez C, Henry C, Mijakovic I, Ryan KR. (2020) hipBA toxin-antitoxin systems mediate persistence in Caulobacter crescentus. Sci Rep, 1 (10) 1-15
Kilani J, Davanture M, Simon A, Zivy M, Fillinger S. (2020) Comparative quantitative proteomics of osmotic signal transduction mutants in Botrytis cinerea explain mutant phenotypes and highlight interaction with cAMP and Ca2+ signalling pathways. J Proteomics, (212) 103580
Le Ribeuz H, Dumont F, Ruellou G, Lambert M, Balliau T, Quatredeniers M, Girerd B, Cohen-Kaminsky S, Mercier O, Yen-Nicolaÿ S, Humbert M, Montani D, Capuano V, Antigny F. (2020) Proteomic Analysis of KCNK3 Loss of Expression Identified Dysregulated Pathways in Pulmonary Vascular Cells. Int J Mol Sci, 19 (21)
Lingeswaran A, Metton C, Henry C, Monnet V, Juillard V, Gardan R. (2020) Export of Rgg Quorum Sensing Peptides is Mediated by the PptAB ABC Transporter in Streptococcus Thermophilus Strain LMD-9. Genes, 9 (11) 1096
Lonjon F, Rengel D, Roux F, Henry C, Turner M, Le Ru A, Razavi N, Sabbagh CRR, Genin S, Vailleau F. (2020) HpaP Sequesters HrpJ, an Essential Component of Ralstonia solanacearum Virulence That Triggers Necrosis in Arabidopsis. Mol. Plant Microbe Interact., 2 (33) 200-211
Luo J, Havé M, Clément G, Tellier F, Balliau T, Launay-Avon A, Guérard F, Zivy M, Masclaux-Daubresse C. (2020) Integrating multiple omics to dissect the common and specific molecular changes occurring in Arabidopsis thaliana (L.) under nitrate and sulfate chronic limitations. J. Exp. Bot., ()
Millan-Oropeza A, Henry C, Lejeune C, David M, Virolle MJ. (2020) Expression of genes of the Pho regulon is altered in Streptomyces coelicolor. Scientific Reports, 1 (10) 8492
Nef C, Henry C, Nicolau Élodie, Bérard JB, Hervé F, Caruana AMN, Kaas R, Mairet F, Garnier M. (2020) Cobalamin Scarcity Modifies Carbon Allocation and Impairs DMSP Production Through Methionine Metabolism in the Haptophyte Microalgae Tisochrysis lutea. Front. Mar. Sci., (7)
Proust L, Haudebourg E, Sourabié A, Pedersen M, Besançon I, Monnet V, Juillard V. (2020) Multi-omics approach reveals how yeast extract peptides shape Streptococcus thermophilus metabolism. Appl Environ Microbiol, () AEM.01446-20, aem;AEM.01446-20v1
Ryskalieva A, Krupova Z, Henry C, Faye B, Konuspayeva GS, Martin P. (2020) Fundamental studies of milk exosomes Camelus dromedarius, Camelus bactrianus and hybrids from Kazakhstan. Experimental Biology, 3 (84)
Ryskaliyeva A, Krupova Z, Henry C, Faye B, Konuspayeva G, Martin P. (2020) Comprehensive proteomic analysis of camel milk-derived extracellular vesicles. International Journal of Biology and Chemistry, 2 (12) 93-104
Saux M, Ponnaiah M, Langlade N, Zanchetta C, Balliau T, El-Maarouf-Bouteau H, Bailly C. (2020) A multiscale approach reveals regulatory players of water stress responses in seeds during germination. Plant Cell Environ., ()
Tcherkez G, Carroll A, Abadie C, Mainguet S, Davanture M, Zivy M. (2020) Protein synthesis increases with photosynthesis via the stimulation of translation initiation. Plant Sci., (291) 110352


Auger S, Henry C, Péchaux C, Lejal N, Zanet V, Nikolic MV, Manzano M, Vidic J. (2019) Exploring the impact of Mg-doped ZnO nanoparticles on a model soil microorganism Bacillus subtilis. Ecotoxicol. Environ. Saf., (182) 109421
Bancel E, Bonnot T, Davanture M, Alvarez D, Zivy M, Martre P, Déjean S, Ravel C. (2019) Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. Front Plant Sci, (10) 832
Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat JP, Stitt M, Usadel B, Zivy M, Beauvoit B, Gibon Y, Colombié S. (2019) Modeling Protein Destiny in Developing Fruit. Plant Physiol., 3 (180) 1709-1724
Belouah I, Blein-Nicolas M, Balliau T, Gibon Y, Zivy M, Colombié S. (2019) Peptide filtering differently affects the performances of XIC-based quantification methods. Journal of Proteomics, (193) 131-141
Chauffour F, Bailly M, Perreau F, Cueff G, Suzuki H, Collet B, Frey A, Clément G, Soubigou-Taconnat L, Balliau T, Krieger-Liszkay A, Rajjou L, Marion-Poll A. (2019) Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation. Plant Physiol., 2 (180) 1198-1218
Cui J, Davanture M, Zivy M, Lamade E, Tcherkez G. (2019) Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm. New Phytologist, 1 (223) 310-322
Doughty TW, Domenzain I, Millan-Oropeza A, Montini N, Groot PA, Pereira R, Nielsen J, Henry C, Daran JMG, Siewers V, Morrissey JP. (2019) Young Genes are More Responsive to Environmental Stress than Ancient Genes in Budding Yeasts. bioRxiv, () 660274
Duruflé H, Ranocha P, Balliau T, Dunand C, Jamet E. (2019) Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature. Data Brief, (27) 104581
Filiatrault-Chastel C, Navarro D, Haon M, Grisel S, Herpoël-Gimbert I, Chevret D, Fanuel M, Henrissat B, Heiss-Blanquet S, Margeot A, Berrin JG. (2019) AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes. Biotechnol Biofuels, (12) 55
Havé M, Luo J, Tellier F, Balliau T, Cueff G, Chardon F, Zivy M, Rajjou L, Cacas JL, Masclaux-Daubresse C. (2019) Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in endoplasmic reticulum and peroxisome metabolisms and in lipid composition. New Phytol., 3 (223) 1461-1477
Henry C, Haller L, Blein-Nicolas M, Zivy M, Canette A, Verbrugghe M, Mézange C, Boulay M, Gardan R, Samson S, Martin V, André-Leroux G, Monnet V. (2019) Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome. Front Microbiol, (10) 1329
Kénanian G, Morvan C, Weckel A, Pathania A, Anba-Mondoloni J, Halpern D, Gaillard M, Solgadi A, Dupont L, Henry C, Poyart C, Fouet A, Lamberet G, Gloux K, Gruss A. (2019) Permissive Fatty Acid Incorporation Promotes Staphylococcal Adaptation to FASII Antibiotics in Host Environments. Cell Reports, 12 (29) 3974-3982.e4
Prola A, Blondelle J, Vandestienne A, Piquereau J, Denis RGP, Guyot S, Chauvin H, Mourier A, Letheule M, Maurer M, Henry C, Khadhraoui N, Courtin G, Blanchard-Gutton N, Guillaud L, Barthélémy I, Gressette M, Solgadi A, Dumont F, Castel J, Ternacle J, Demarquoy J, Malgoyre A, Koulmann N, Derumeaux G, Giraud MF, Blot S, Joubert F, Veksler V, Luquet S, Relaix F, Tiret L, Pilot-Storck F. (2019) Alteration of cardiolipin-dependent mitochondrial coupling in muscle protects against obesity. bioRxiv, () 715953
Proust L, Sourabié A, Pedersen M, Besançon I, Haudebourg E, Monnet V, Juillard V. (2019) Insights Into the Complexity of Yeast Extract Peptides and Their Utilization by Streptococcus thermophilus. Front Microbiol, (10) 906
Rusconi F. (2019) mineXpert: Biological Mass Spectrometry Data Visualization and Mining with Full JavaScript Ability. J. Proteome Res., 5 (18) 2254-2259
Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. (2019) Alternative splicing events expand molecular diversity of camel CSN1S2 increasing its ability to generate potentially bioactive peptides. Scientific Reports, 1 (9) 5243
Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. (2019) The main WAP isoform usually found in camel milk arises from the usage of an improbable intron cryptic splice site in the precursor to mRNA in which a GC-AG intron occurs. BMC Genet, 1 (20) 14


Aloui A, Recorbet G, Lemaître-Guillier C, Mounier A, Balliau T, Zivy M, Wipf D, Dumas-Gaudot E. (2018) The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis. Mycorrhiza, 1 (28) 1-16
Amara S, Perrot T, Navarro D, Deroy A, Benkhelfallah A, Chalak A, Daou M, Chevret D, Faulds CB, Berrin JG, Morel-Rouhier M, Gelhaye E, Record E. (2018) Enzyme Activities of Two Recombinant Heme-Containing Peroxidases, TvDyP1 and TvVP2, Identified from the Secretome of Trametes versicolor. Appl. Environ. Microbiol., 8 (84)
Auger S, Henry C, Péchoux C, Suman S, Lejal N, Bertho N, Larcher T, Stankic S, Vidic J. (2018) Exploring multiple effects of Zn0.15Mg0.85O nanoparticles on Bacillus subtilis and macrophages. Sci Rep, 1 (8) 12276
Balliau T, Blein-Nicolas M, Zivy M. (2018) Evaluation of Optimized Tube-Gel Methods of Sample Preparation for Large-Scale Plant Proteomics. Proteomes, 1 (6)
Berrabah F, Balliau T, Aït-Salem EH, George J, Zivy M, Ratet P, Gourion B. (2018) Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia. New Phytol., 1 (219) 310-323
Bichang’a G, Da Lage JL, Capdevielle-Dulac C, Zivy M, Balliau T, Sambai K, Le Ru B, Kaiser L, Juma G, Maina ENM, Calatayud PA. (2018) α-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes. J Chem Ecol, 11 (44) 1030-1039
García García T, Ventroux M, Derouiche A, Bidnenko V, Correia Santos S, Henry C, Mijakovic I, Noirot-Gros MF, Poncet S. (2018) Phosphorylation of the Bacillus subtilis Replication Controller YabA Plays a Role in Regulation of Sporulation and Biofilm Formation. Front Microbiol, (9) 486
Gaurivaud P, Ganter S, Villard A, Manso-Silvan L, Chevret D, Boulé C, Monnet V, Tardy F. (2018) Mycoplasmas are no exception to extracellular vesicles release: Revisiting old concepts. PLoS ONE, 11 (13) e0208160
Havé M, Balliau T, Cottyn-Boitte B, Dérond E, Cueff G, Soulay F, Lornac A, Reichman P, Dissmeyer N, Avice JC, Gallois P, Rajjou L, Zivy M, Masclaux-Daubresse C. (2018) Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?. J. Exp. Bot., 6 (69) 1369-1385
Lesage-Meessen L, Bou M, Ginies C, Chevret D, Navarro D, Drula E, Bonnin E, Del Río JC, Odinot E, Bisotto A, Berrin JG, Sigoillot JC, Faulds CB, Lomascolo A. (2018) Lavender- and lavandin-distilled straws: an untapped feedstock with great potential for the production of high-added value compounds and fungal enzymes. Biotechnol Biofuels, (11) 217
Miyauchi S, Rancon A, Drula E, Hage H, Chaduli D, Favel A, Grisel S, Henrissat B, Herpoël-Gimbert I, Ruiz-Dueñas FJ, Chevret D, Hainaut M, Lin J, Wang M, Pangilinan J, Lipzen A, Lesage-Meessen L, Navarro D, Riley R, Grigoriev IV, Zhou S, Raouche S, Rosso MN. (2018) Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass. Biotechnol Biofuels, (11) 201
Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. (2018) Combining different proteomic approaches to resolve complexity of the milk protein fraction of dromedary, Bactrian camels and hybrids, from different regions of Kazakhstan. PLoS ONE, 5 (13) e0197026


Badalato N, Guillot A, Sabarly V, Dubois M, Pourette N, Pontoire B, Robert P, Bridier A, Monnet V, Sousa DZ, Durand S, Mazéas L, Buléon A, Bouchez T, Mortha G, Bize A. (2017) Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties. PLoS ONE, 1 (12) e0170524
Biacchesi S, Mérour E, Chevret D, Lamoureux A, Bernard J, Brémont M. (2017) NV Proteins of Fish Novirhabdovirus Recruit Cellular PPM1Bb Protein Phosphatase and Antagonize RIG-I-Mediated IFN Induction. Sci Rep, (7) 44025
Bonnot T, Bancel E, Alvarez D, Davanture M, Boudet J, Pailloux M, Zivy M, Ravel C, Martre P. (2017) Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. Plant J., 5 (91) 894-910
Duchesne A, Vaiman A, Castille J, Beauvallet C, Gaignard P, Floriot S, Rodriguez S, Vilotte M, Boulanger L, Passet B, Albaric O, Guillaume F, Boukadiri A, Richard L, Bertaud M, Timsit E, Guatteo R, Jaffrézic F, Calvel P, Helary L, Mahla R, Esquerré D, Péchoux C, Liuu S, Vallat JM, Boichard D, Slama A, Vilotte JL. (2017) Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health. PLoS Genet., 4 (13) e1006597
Durcin M, Fleury A, Taillebois E, Hilairet G, Krupova Z, Henry C, Truchet S, Trötzmüller M, Köfeler H, Mabilleau G, Hue O, Andriantsitohaina R, Martin P, Le Lay S. (2017) Characterisation of adipocyte-derived extracellular vesicle subtypes identifies distinct protein and lipid signatures for large and small extracellular vesicles. J Extracell Vesicles, 1 (6) 1305677
Duruflé H, Hervé V, Ranocha P, Balliau T, Zivy M, Chourré J, San Clemente H, Burlat V, Albenne C, Déjean S, Jamet E, Dunand C. (2017) Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study. Plant Sci., (263) 183-193
Duruflé H, Clemente HS, Balliau T, Zivy M, Dunand C, Jamet E. (2017) Cell wall proteome analysis of Arabidopsis thaliana mature stems. Proteomics, 8 (17)
Duruflé H, Hervé V, Balliau T, Zivy M, Dunand C, Jamet E. (2017) Proline Hydroxylation in Cell Wall Proteins: Is It Yet Possible to Define Rules?. Front Plant Sci, (8) 1802
Galland M, He D, Lounifi I, Arc E, Clément G, Balzergue S, Huguet S, Cueff G, Godin B, Collet B, Granier F, Morin H, Tran J, Valot B, Rajjou L. (2017) An Integrated "Multi-Omics" Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality. Front Plant Sci, (8) 1984
Guilbaud M, Bruzaud J, Bouffartigues E, Orange N, Guillot A, Aubert-Frambourg A, Monnet V, Herry JM, Chevalier S, Bellon-Fontaine MN. (2017) Proteomic Response of Pseudomonas aeruginosa PAO1 Adhering to Solid Surfaces. Front Microbiol, (8) 1465
Jean N, Dumont E, Herzi F, Balliau T, Laabir M, Masseret E, Mounier S. (2017) Modifications of the soluble proteome of a mediterranean strain of the invasive neurotoxic dinoflagellate Alexandrium catenella under metal stress conditions. Aquat. Toxicol., (188) 80-91
Langella O, Valot B, Balliau T, Blein-Nicolas M, Bonhomme L, Zivy M. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J. Proteome Res., 2 (16) 494-503
Millan-Oropeza A, Henry C, Blein-Nicolas M, Aubert-Frambourg A, Moussa F, Bleton J, Virolle MJ. (2017) Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans. J. Proteome Res., 7 (16) 2597-2613
Miyauchi S, Navarro D, Grisel S, Chevret D, Berrin JG, Rosso MN. (2017) The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown. PLoS ONE, 4 (12) e0175528
Negroni L, Zivy M, Lemaire C. (2017) Mass Spectrometry of Mitochondrial Membrane Protein Complexes. Methods Mol. Biol., (1635) 233-246
Pérez-Pascual D, Rochat T, Kerouault B, Gómez E, Neulat-Ripoll F, Henry C, Quillet E, Guijarro JA, Bernardet JF, Duchaud E. (2017) More Than Gliding: Involvement of GldD and GldG in the Virulence of Flavobacterium psychrophilum. Front Microbiol, (8) 2168
Regente M, Pinedo M, San Clemente H, Balliau T, Jamet E, Canal L. (2017) Plant extracellular vesicles are incorporated by a fungal pathogen and inhibit its growth. J. Exp. Bot., 20 (68) 5485-5495
Renvoisé M, Bonhomme L, Davanture M, Zivy M, Lemaire C. (2017) Phosphoproteomic Analysis of Isolated Mitochondria in Yeast. Methods Mol. Biol., (1636) 283-299
Rouzet A, Reboux G, Dalphin JC, Gondouin A, De Vuyst P, Balliau T, Millon L, Valot B, Roussel S. (2017) An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung. J. Immunol. Methods, (450) 58-65
Sauvageot N, Mokhtari A, Joyet P, Budin-Verneuil A, Blancato VS, Repizo GD, Henry C, Pikis A, Thompson J, Magni C, Hartke A, Deutscher J. (2017) Enterococcus faecalis Uses a Phosphotransferase System Permease and a Host Colonization-Related ABC Transporter for Maltodextrin Uptake. J. Bacteriol., 9 (199)
Tangthirasunun N, Navarro D, Garajova S, Chevret D, Tong LCH, Gautier V, Hyde KD, Silar P, Berrin JG. (2017) Inactivation of Cellobiose Dehydrogenases Modifies the Cellulose Degradation Mechanism of Podospora anserina. Appl. Environ. Microbiol., 2 (83)
Turonova H, Haddad N, Hernould M, Chevret D, Pazlarova J, Tresse O. (2017) Profiling of Campylobacter jejuni Proteome in Exponential and Stationary Phase of Growth. Front Microbiol, (8) 913
Villegente M, Marmey P, Job C, Galland M, Cueff G, Godin B, Rajjou L, Balliau T, Zivy M, Fogliani B, Sarramegna-Burtet V, Job D. (2017) A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda. Proteomes, 3 (5)


Abadie C, Mainguet S, Davanture M, Hodges M, Zivy M, Tcherkez G. (2016) Concerted Changes in the Phosphoproteome and Metabolome Under Different CO2/O2 Gaseous Conditions in Arabidopsis Rosettes. Plant Cell Physiol., 7 (57) 1544-1556
Blein-Nicolas M, Zivy M. (2016) Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics. Biochim Biophys Acta, 8 (1864) 883-895
Derkaoui M, Antunes A, Poncet S, Nait Abdallah J, Joyet P, Mazé A, Henry C, Taha MK, Deutscher J, Deghmane AE. (2016) The phosphocarrier protein HPr of Neisseria meningitidis interacts with the transcription regulator CrgA and its deletion affects capsule production, cell adhesion, and virulence. Mol. Microbiol., 5 (100) 788-807
Dobrenel T, Mancera-Martínez E, Forzani C, Azzopardi M, Davanture M, Moreau M, Schepetilnikov M, Chicher J, Langella O, Zivy M, Robaglia C, Ryabova LA, Hanson J, Meyer C. (2016) The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci, (7) 1611
Guillot A, Boulay M, Chambellon Émilie, Gitton C, Monnet V, Juillard V. (2016) Mass Spectrometry Analysis of the Extracellular Peptidome of Lactococcus lactis: Lines of Evidence for the Coexistence of Extracellular Protein Hydrolysis and Intracellular Peptide Excretion. J. Proteome Res., 9 (15) 3214-3224
Hervé V, Duruflé H, San Clemente H, Albenne C, Balliau T, Zivy M, Dunand C, Jamet E. (2016) An enlarged cell wall proteome of Arabidopsis thaliana rosettes. Proteomics, 24 (16) 3183-3187
Honvo-Houéto E, Henry C, Chat S, Layani S, Truchet S. (2016) The endoplasmic reticulum and casein-containing vesicles contribute to milk fat globule membrane. Mol. Biol. Cell, 19 (27) 2946-2964
Lonjon F, Turner M, Henry C, Rengel D, Lohou D, Kerkhove Q, Cazalé AC, Peeters N, Genin S, Vailleau F. (2016) Comparative Secretome Analysis of Ralstonia solanacearum Type 3 Secretion-Associated Mutants Reveals a Fine Control of Effector Delivery, Essential for Bacterial Pathogenicity. Mol. Cell Proteomics, 2 (15) 598-613
Miyauchi S, Navarro D, Grigoriev IV, Lipzen A, Riley R, Chevret D, Grisel S, Berrin JG, Henrissat B, Rosso MN. (2016) Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. Front Microbiol, (7) 1335
Nguyen-Kim H, San Clemente H, Balliau T, Zivy M, Dunand C, Albenne C, Jamet E. (2016) Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences. Proteomics, 3 (16) 491-503
Putignani L, Del Chierico F, Vernocchi P, Cicala M, Cucchiara S, Dallapiccola B, Group DS. (2016) Gut Microbiota Dysbiosis as Risk and Premorbid Factors of IBD and IBS Along the Childhood-Adulthood Transition. Inflamm. Bowel Dis., 2 (22) 487-504
Randazzo P, Aubert-Frambourg A, Guillot A, Auger S. (2016) The MarR-like protein PchR (YvmB) regulates expression of genes involved in pulcherriminic acid biosynthesis and in the initiation of sporulation in Bacillus subtilis. BMC Microbiol., 1 (16) 190
Rodrigues RC, Haddad N, Chevret D, Cappelier JM, Tresse O. (2016) Comparison of Proteomics Profiles of Campylobacter jejuni Strain Bf under Microaerobic and Aerobic Conditions. Front Microbiol, (7) 1596
Sabarly V, Aubron C, Glodt J, Balliau T, Langella O, Chevret D, Rigal O, Bourgais A, Picard B, Vienne D, Denamur E, Bouvet O, Dillmann C. (2016) Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates. Environ. Microbiol., 1 (18) 100-117


Bancel E, Bonnot T, Davanture M, Branlard G, Zivy M, Martre P. (2015) Proteomic Approach to Identify Nuclear Proteins in Wheat Grain. J. Proteome Res., 10 (14) 4432-4439
Bize A, Cardona L, Desmond-Le Quéméner E, Battimelli A, Badalato N, Bureau C, Madigou C, Chevret D, Guillot A, Monnet V, Godon JJ, Bouchez T. (2015) Shotgun metaproteomic profiling of biomimetic anaerobic digestion processes treating sewage sludge. Proteomics, 20 (15) 3532-3543
Blein-Nicolas M, Albertin W, Silva T, Valot B, Balliau T, Masneuf-Pomarède I, Bely M, Marullo P, Sicard D, Dillmann C, Vienne D, Zivy M. (2015) A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. Mol. Cell Proteomics, 8 (14) 2056-2071
Bouchez I, Pouteaux M, Canonge M, Genet M, Chardot T, Guillot A, Froissard M. (2015) Regulation of lipid droplet dynamics in Saccharomyces cerevisiae depends on the Rab7-like Ypt7p, HOPS complex and V1-ATPase. Biol Open, 7 (4) 764-775
Couturier M, Navarro D, Chevret D, Henrissat B, Piumi F, Ruiz-Dueñas FJ, Martinez AT, Grigoriev IV, Riley R, Lipzen A, Berrin JG, Master ER, Rosso MN. (2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol Biofuels, (8) 216
Deruyffelaere C, Bouchez I, Morin H, Guillot A, Miquel M, Froissard M, Chardot T, D'Andrea S. (2015) Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Plant Cell Physiol., 7 (56) 1374-1387
Henry C, Saadaoui B, Bouvier F, Cebo C. (2015) Phosphoproteomics of the goat milk fat globule membrane: New insights into lipid droplet secretion from the mammary epithelial cell. Proteomics, 13 (15) 2307-2317
Hummel M, Dobrenel T, Cordewener JJHG, Davanture M, Meyer C, Smeekens SJCM, Bailey-Serres J, America TAHP, Hanson J. (2015) Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes. J Proteomics, (128) 436-449
Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, Kochko A, Sarramegna-Burtet V, Job D. (2015) The Amborella vacuolar processing enzyme family. Front Plant Sci, (6)
Pérez-Pascual D, Gaudu P, Fleuchot B, Besset C, Rosinski-Chupin I, Guillot A, Monnet V, Gardan R. (2015) RovS and its associated signaling peptide form a cell-to-cell communication system required for Streptococcus agalactiae pathogenesis. MBio, 1 (6)
Samazan F, Rokbi B, Seguin D, Telles F, Gautier V, Richarme G, Chevret D, Varela PF, Velours C, Poquet I. (2015) Production, secretion and purification of a correctly folded staphylococcal antigen in Lactococcus lactis. Microb. Cell Fact., (14) 104
Slamti L, Lemy C, Henry C, Guillot A, Huillet E, Lereclus D. (2015) CodY Regulates the Activity of the Virulence Quorum Sensor PlcR by Controlling the Import of the Signaling Peptide PapR in Bacillus thuringiensis. Front Microbiol, (6) 1501
Sourimant J, Rameix-Welti MA, Gaillard AL, Chevret D, Galloux M, Gault E, Eléouët JF. (2015) Fine Mapping and Characterization of the L-Polymerase-Binding Domain of the Respiratory Syncytial Virus Phosphoprotein. J Virol, 8 (89) 4421-4433
Zivy M, Wienkoop S, Renaut J, Pinheiro C, Goulas E, Carpentier S. (2015) The quest for tolerant varieties: the importance of integrating "omics" techniques to phenotyping. Front Plant Sci, (6) 448