Our team develops several bio-informatics tools and softwares to facilitate proteomics data analysis.

    Mass spectrometry

  • X!Tandem pipeline

    This program performes protein identification by database searching using the X!Tandem software and filters the results. This system is an alternative of installing a local server of the GPM. More informatics ...

  • DeNovo Pipeline

    This program performes protein identification by de novo interpretation by coupling the PepNovo software for sequencing and the Fasts tool for homology searching. More informatics ...

  • MassChroQ

    MassChroQ (Mass Chromatogram Quantification) is a fast and versatile software that performes alignment, XIC extraction and quantification on LC-MS/MS data (Valot, Langella, Nano & Zivy, 2011). MassChroQ version 1.0, the first public release version of the software, is now freely available under the GNU General Public Licence. More informatics ...

  • 2D gel analysis

  • Beads

    This program detects spots on 2D gel images. It is based on an analogy with beads flowing uphill on the surface of the gel image and on the analysis of their paths (Langella & Zivy, 2008). More informatics ...

  • Proteomics database

  • PROTICdb

    PROTICdb is a web-based application designed to store and analyze proteomics data (2D gels, protein identification, ...) More informatics ...

  • Other softwares

  • Database Manager

    This program stores metadata of your sequence databases and performs transformation. More informatics ...

If you have any problems or questions, please contact us