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PAPPSO

Plateforme d'Analyse Protéomique de Paris Sud-Ouest

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  • Bioinformatique
  • Analyses LC-MS/MS

Bioinformatique

image/svg+xml X!Tandem MassChroqR MCQR MassChroQ PROTICdb i2MassChroQ mineXpert2
  • MCQR

    Description MCQR is an R package dedicated to statistical analysis of proteomic data. The goal of the MCQR is to provide a consistent set of functions facilitating proteomics data statistical analysis.
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  • PROTICdb

    PROTICdb
    PROTICdb is a web-based application designed to store and analyze proteome data obtained by mass spectrometry. Langella O, Zivy M, Joets J.
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  • ALL-P

    ALL-P is a statistical framework based on a hierarchical modeling that takes into account shared peptide information for estimating protein abundances.
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  • Database Manager

    This Java application, stores all your sequence databases in a single folder (repository). It offers : conservation of metadata : database origin, species, number of protein, download site, … translation of DNA into protein creation of decoy protein databases (protein reverse, random, peptide reverse combination of different existing databases This application can managed multiple repository.
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  • DeNovo pipeline

    The classical method for protein identification of LC-MS/MS data uses database searching and matching, as it is the case in Mascot, Sequest or X!
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Atelier PAPPSO - "Les outils bioinformatiques d'analyse des données de protéomique développés par la plateforme PAPPSO"
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mineXpert2 i2MassChroQ MassChroQ PROTICdb ALL-P Database Manager DeNovo pipeline metaprotr SpectrumFinder Beads

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