Articles published in 2017

  • Badalato, N., Guillot, A., Sabarly, V., Dubois, M., Pourette, N., Pontoire, B., Robert, P., Bridier, A., Monnet, V., Sousa, D., Durand, S., Mazéas, L., Buléon, A., Bouchez, T., Mortha, G., Bize, A. (2017) Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties. PloS one, 12 e0170524
  • Biacchesi, S., Mérour, E., Chevret, D., Lamoureux, A., Bernard, J., Brémont, M. (2017) NV Proteins of Fish Novirhabdovirus Recruit Cellular PPM1Bb Protein Phosphatase and Antagonize RIG-I-Mediated IFN Induction. Sci Rep, 7 44025
  • Bonnot, T., Bancel, E., Alvarez, D., Davanture, M., Boudet, J., Pailloux, M., Zivy, M., Ravel, C., Martre, P. (2017) Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. Plant J., 91 894-910
  • Duchesne, A., Vaiman, A., Castille, J., Beauvallet, C., Gaignard, P., Floriot, S., Rodriguez, S., Vilotte, M., Boulanger, L., Passet, B., Albaric, O., Guillaume, F., Boukadiri, A., Richard, L., Bertaud, M., Timsit, E., Guatteo, R., Jaffrézic, F., Calvel, P., Helary, L., Mahla, R., Esquerré, D., Péchoux, C., Liuu, S., Vallat, J., Boichard, D., Slama, A., Vilotte, J. (2017) Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health. PLoS genetics, 13 e1006597
  • Durcin, M., Fleury, A., Taillebois, E., Hilairet, G., Krupova, Z., Henry, C., Truchet, S., Trötzmüller, M., Köfeler, H., Mabilleau, G., Hue, O., Andriantsitohaina, R., Martin, P., Le Lay, S. (2017) Characterisation of adipocyte-derived extracellular vesicle subtypes identifies distinct protein and lipid signatures for large and small extracellular vesicles. J Extracell Vesicles, 6 1305677
  • Duruflé, H., Clemente, H., Balliau, T., Zivy, M., Dunand, C., Jamet, E. (2017) Cell wall proteome analysis of Arabidopsis thaliana mature stems. Proteomics, 17 1600449
  • Duruflé, H., Hervé, V., Ranocha, P., Balliau, T., Zivy, M., Chourré, J., San Clemente, H., Burlat, V., Albenne, C., Déjean, S., Jamet, E., Dunand, C. (2017) Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study. Plant Sci, 263 183-193
  • Guilbaud, M., Bruzaud, J., Bouffartigues, E., Orange, N., Guillot, A., Aubert-Frambourg, A., Monnet, V., Herry, J., Chevalier, S., Bellon-Fontaine, M. (2017) Proteomic Response of Pseudomonas aeruginosa PAO1 Adhering to Solid Surfaces. Frontiers in microbiology, 8 1465
  • Jean, N., Dumont, E., Herzi, F., Balliau, T., Laabir, M., Masseret, E., Mounier, S. (2017) Modifications of the soluble proteome of a mediterranean strain of the invasive neurotoxic dinoflagellate Alexandrium catenella under metal stress conditions. Aquat. Toxicol., 188 80-91
  • Langella, O., Valot, B., Balliau, T., Blein-Nicolas, M., Bonhomme, L., Zivy, M. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J Proteome Res., 16 494-503
  • Millan-Oropeza, A., Henry, C., Blein-Nicolas, M., Aubert-Frambourg, A., Moussa, F., Bleton, J., Virolle, M. (2017) Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans. J Proteome Res., 16 2597-2613
  • Miyauchi, S., Navarro, D., Grisel, S., Chevret, D., Berrin, J., Rosso, M. (2017) The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown. PloS one, 12 e0175528
  • Negroni, L., Zivy, M., Lemaire, C. (2017) Mass Spectrometry of Mitochondrial Membrane Protein Complexes. Methods Mol Biol (Clifton, N.J.), 1635 233-246
  • Renvoisé, M., Bonhomme, L., Davanture, M., Zivy, M., Lemaire, C. (2017) Phosphoproteomic Analysis of Isolated Mitochondria in Yeast. Methods Mol Biol(Clifton, N.J.), 1636 283-299
  • Rouzet, A., Reboux, G., Dalphin, J., Gondouin, A., De Vuyst, P., Balliau, T., Millon, L., Valot, B., Roussel, S. (2017) An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung. J Immunol Methods, 450 58-65
  • Sauvageot, N., Mokhtari, A., Joyet, P., Budin-Verneuil, A., Blancato, V., Repizo, G., Henry, C., Pikis, A., Thompson, J., Magni, C., Hartke, A., Deutscher, J. (2017) Enterococcus faecalis Uses a Phosphotransferase System Permease and a Host Colonization-Related ABC Transporter for Maltodextrin Uptake. J. Bacteriol., 199 e00878-16
  • Tangthirasunun, N., Navarro, D., Garajova, S., Chevret, D., Tong, L., Gautier, V., Hyde, K., Silar, P., Berrin, J. (2017) Inactivation of Cellobiose Dehydrogenases Modifies the Cellulose Degradation Mechanism of Podospora anserina. Appl Environ Microbiol, 83 e02716-16
  • Turonova, H., Haddad, N., Hernould, M., Chevret, D., Pazlarova, J., Tresse, O. (2017) Profiling of Campylobacter jejuni Proteome in Exponential and Stationary Phase of Growth. Front Microbiol, 8 913

Articles published in 2016

  • Abadie, C., Mainguet, S., Davanture, M., Hodges, M., Zivy, M., Tcherkez, G. (2016) Concerted Changes in the Phosphoproteome and Metabolome Under Different CO2/O2 Gaseous Conditions in Arabidopsis Rosettes. Plant cell physiol., 57 1544-1556
  • Blein-Nicolas, M., Zivy, M. (2016) Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics. Biochim et Biophys Acta,1864 883-95
  • Derkaoui, M., Antunes, A., Poncet, S., Nait Abdallah, J., Joyet, P., Mazé, A., Henry, C., Taha, M.-K., Deutscher, J. , Deghmane, A.-E. (2016) The phosphocarrier protein HPr of Neisseria meningitidis interacts with the transcription regulator CrgA and its deletion affects capsule production, cell adhesion, and virulence. Mol Microbiol, 100 788–807
  • Dobrenel, T., Mancera-Martínez, E., Forzani, C., Azzopardi, M., Davanture, M., Moreau, M., Schepetilnikov, M., Chicher, J., Langella, O., Zivy, M., Robaglia, C., Ryabova, L. A., Hanson, J. , Meyer, C. (2016) The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front. Plant Sci., 7 1611.
  • Guillot, A., Boulay, M., Chambellon, É., Gitton, C., Monnet, V. , Juillard, V. (2016) Mass Spectrometry Analysis of the Extracellular Peptidome of Lactococcus lactis: Lines of Evidence for the Coexistence of Extracellular Protein Hydrolysis and Intracellular Peptide Excretion. J. Proteome Res., 15 3214–3224.
  • Hervé, V., Duruflé, H., San Clemente, H., Albenne, C., Balliau, T., Zivy, M., Dunand, C., Jamet, E. (2016) An enlarged cell wall proteome of Arabidopsis thaliana rosettes. Proteomics, 16 3183-3187
  • Honvo-Houéto, E., Henry, C., Chat, S., Layani, S. , Truchet, S. (2016) The endoplasmic reticulum and casein-containing vesicles contribute to milk fat globule membrane. Mol. Biol. Cell., 27(19) 2946-2964
  • Lonjon, F., Turner, M., Henry, C., Rengel, D., Lohou, D., van de Kerkhove, Q., Cazalé, A.-C., Peeters, N., Genin, S. , Vailleau, F. (2016) Comparative Secretome Analysis of Ralstonia solanacearum Type 3 Secretion-Associated Mutants Reveals a Fine Control of Effector Delivery, Essential for Bacterial Pathogenicity. Mol. Cell. Proteomics 15 598–613.
  • Miyauchi, S., Navarro, D., Grigoriev, I. V., Lipzen, A., Riley, R., Chevret, D., Grisel, S., Berrin, J.-G., Henrissat, B. , Rosso, M.-N. (2016) Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. Front. Microbiol., 7 1335.
  • Nguyen-Kim, H., Clemente, H. S., Balliau, T., Zivy, M., Dunand, C., Albenne, C. , Jamet, E. (2016) Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences. Proteomics, 16 491-503
  • Putignani, L., Del Chierico, F., Vernocchi, P., Cicala, M., Cucchiara, S., Dallapiccola, B., Dysbiotrack Study Group (2016) Gut Microbiota Dysbiosis as Risk and Premorbid Factors of IBD and IBS Along the Childhood-Adulthood Transition. Inflammatory bowel diseases, 22 487-504
  • Randazzo, P., Aubert-Frambourg, A. , Guillot, A. , Auger, S. (2016) The MarR-like protein PchR (YvmB)regulates expression of genes involved in pulcherriminic acid biosynthesis and in the initiation of sporulation in Bacillus subtilis. BMC Microbiology, 16 190
  • Rodrigues, R., Haddad, N., Chevret, D., Cappelier, J., Tresse, O. (2016) Comparison of Proteomics Profiles of Campylobacter jejuni Strain Bf under Microaerobic and Aerobic Conditions. Frontiers in microbiology, 7 1596
  • Sabarly, V., Aubron, C., Glodt, J., Balliau, T., Langella, O., Chevret, D., Rigal, O., Bourgais, A., Picard, B., de Vienne, D., Denamur, E., Bouvet, O. , Dillmann, C. (2016) Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates. Environ. Microbiol., 18 100-17
  • Slamti, L., Lemy, C., Lereclus, D., Huillet, E., Henry, C. , Guillot, A. (2016) CodY regulates the activity of the virulence quorum sensor PlcR by controlling the import of the signaling peptide PapR in Bacillus thuringiensis. Frontiers in Microbiology, 6 1501

Articles published in 2015

  • Bancel, E., Bonnot, T., Davanture, M., Branlard, G., Zivy, M., Martre, P. (2015) Proteomic Approach to Identify Nuclear Proteins in Wheat Grain. J. Proteome Res., 14 4432–4439.
  • Bize, A., Cardona, L., Desmond-Le Quéméner, E., Battimelli, A., Badalato, N., Bureau, C., Madigou, C., Chevret, D., Guillot, A., Monnet, V., Godon, J.-J. , Bouchez, T. (2015) Shotgun metaproteomic profiling of biomimetic anaerobic digestion processes treating sewage sludge. Proteomics, 15 3532–3543.
  • Blein-Nicolas, M., Albertin, W., da Silva, T., Valot, B., Balliau, T., Masneuf-Pomarède, I., Bely, M., Marullo, P., Sicard, D., Dillmann, C., de Vienne, D. , Zivy, M. (2015) A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. Mol. Cell Prot., 14 2056–2071.
  • Bouchez, I., Pouteaux, M., Canonge, M., Genet, M., Chardot, T., Guillot, A. , Froissard, M. (2015) Regulation of lipid droplet dynamics in Saccharomyces cerevisiae depends on the Rab7-like Ypt7p, HOPS complex and V1-ATPase. Biol Open, 4 764–775.
  • Couturier, M., Navarro, D., Chevret, D.C, Henrissat, B., Piumi, F., Ruiz-Dueñas, F. J., Martinez, A. T., Grigoriev, I. V., Riley, R., Lipzen, A., Berrin, J.-G., Master, E. R. , Rosso, M.-N. (2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol. Biofuels, 8 216.
  • Deruyffelaere, C., Bouchez, I., Morin, H., Guillot, A., Miquel, M., Froissard, M., Chardot, T. , D'Andrea, S. (2015) Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Plant Cell Physiol, 56 1374–1387.
  • Henry, C., Saadaoui, B., Bouvier, F. , Cebo, C. (2015) Phosphoproteomics of the goat Milk Fat Globule Membrane: New insights into lipid droplet secretion from the mammary epithelial cell. Proteomics, 15 2307–2317.
  • Hummel, M., Dobrenel, T., Cordewener, J. J. H. G., Davanture, M., Meyer, C., Smeekens, S. J. C. M., Bailey-Serres, J., America, T. A. H. P. , Hanson, J. (2015) Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes. J. Proteomics, 128 436–449.
  • Maserti, B., Podda, A., Giorgetti, L., Del Carratore, R., Chevret, D. , Migheli, Q. (2015) Proteome changes during yeast-like and pseudohyphal growth in the biofilm-forming yeast Pichia fermentans. Amino Acids, 47 1091–1106.
  • Pérez-Pascual, D., Gaudu, P., Fleuchot, B., Besset, C., Rosinski-Chupin, I., Guillot, A., Monnet, V. , Gardan, R. (2015) RovS and Its Associated Signaling Peptide Form a Cell-To-Cell Communication System Required for Streptococcus agalactiae Pathogenesis. mBio, 6. e02306-14
  • Poncet, V., Scutt, C., Tournebize, R., Villegente, M., Cueff, G., Rajjou, L., Balliau, T., Zivy, M., Fogliani, B., Job, C., de Kochko, A., Sarramegna-Burtet, V. , Job, D. (2015) The Amborella vacuolar processing enzyme family.Front Plant Sci, 6 618.
  • Samazan, F., Rokbi, B., Seguin, D., Telles, F., Gautier, V., Richarme, G., Chevret, D., Varela, P. F., Velours, C. , Poquet, I. (2015) Production, secretion and purification of a correctly folded staphylococcal antigen in Lactococcus lactis. Microb Cell Fact, 14 104.
  • Sourimant, J., Rameix-Welti, M.-A., Gaillard, A.-L., Chevret, D., Galloux, M., Gault, E. , Eléouët, J.-F. (2015) Fine mapping and characterization of the L-polymerase-binding domain of the respiratory syncytial virus phosphoprotein. J. Virol., 89 4421–4433.
  • Zivy, M., Wienkoop, S., Renaut, J., Pinheiro, C., Goulas, E. , Carpentier, S. (2015) The quest for tolerant varieties: The importance of integrating "omics" techniques to phenotyping. Front Plant Sci, 6 448.

Articles published in 2014

  • Abdallah C, Valot B, Guillier C, Mounier A, Balliau T, Zivy M, van Tuinen D, Renaut J, Wipf D, Dumas-Gaudot E, Recorbet G (2014) The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis. J. Proteomics, 108 354–368.
  • Amiour, N., Imbaud, S., Clément, G., Agier, N., Zivy, M., Valot, B., Balliau, T., Quilleré, I., Tercé-Laforgue, T., Dargel-Graffin, C. , Hirel, B. (2014) An integrated "omics" approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase. BMC Genomics, 15 1005.
  • Boex-Fontvieille E, Jossier M, Davanture M, Zivy M, Hodges M, Tcherkez G (2014) Differential protein phosphorylation regulates chloroplast movement in response to strong light and darkness in Arabidopsis.Plant Mol Biol Rep, 32 987–1001.
  • Boex-Fontvieille, E., Davanture, M., Jossier, M., Zivy, M., Hodges, M. , Tcherkez, G. (2014) Photosynthetic activity influences cellulose biosynthesis and phosphorylation of proteins involved therein in Arabidopsis leaves. J. Exp. Bot., 65 4997–5010.
  • Boex-Fontvieille, E., Daventure, M., Jossier, M., Hodges, M., Zivy, M. , Tcherkez, G. (2014) Phosphorylation pattern of Rubisco activase in Arabidopsis leaves. Plant Biol, 16 550–557.
  • Chaze, T., Guillot, A., Valot, B., Langella, O., Chamot-Rooke, J., Di Guilmi, A.-M., Trieu-Cuot, P., Dramsi, S. , Mistou, M.-Y. (2014) O-glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry. Mol. Cell. Proteomics, 13 2168-2182
  • Davanture, M., Dumur, J., Bataillé-Simoneau, N., Campion, C., Valot, B., Zivy, M., Simoneau, P. , Fillinger, S. (2014) Phosphoproteome profiles of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea during exponential growth in axenic cultures. Proteomics, 14 1639-1645
  • Desjardin, C., Chat, S., Gilles, M., Legendre, R., Riviere, J., Mata, X., Balliau, T., Esquerré, D., Cribiu, E. P., Betch, J.-M. , Schibler, L. (2014) Involvement of mitochondrial dysfunction and ER-stress in the physiopathology of equine osteochondritis dissecans (OCD). Exp. Mol. Pathol., 96 328–338.
  • Gonneau, M., Desprez, T., Guillot, A., Vernhettes, S. , Höfte, H. (2014) Catalytic subunit stoichiometry within the cellulose synthase complex. Plant Physiol., 166 1709–1712.
  • Hägglund, S., Hu, K., Blodörn, K., Makabi-Panzu, B., Gaillard, A.-L., Ellencrona, K., Chevret, D., Hellman, L., Lövgren Bengtsson, K., Riffault, S., Taylor, G., Valarcher, J.-F. , Eléouët, J.-F. (2014) Characterization of an experimental vaccine for bovine respiratory syncytial virus. Clin Vaccine Immunol, 21 997-1004
  • Juste, C., Kreil, D. P., Beauvallet, C., Guillot, A., Vaca, S., Carapito, C., Mondot, S., Sykacek, P., Sokol, H., Blon, F., Lepercq, P., Levenez, F., Valot, B., Carré, W., Loux, V., Pons, N., David, O., Schaeffer, B., Lepage, P., Martin, P., Monnet, V., Seksik, P., Beaugerie, L., Ehrlich, D. S., Gibrat, J.-F., Van Dorsselaer, A. , Doré, J. (2014) Bacterial protein signals are associated with Crohn's disease. Gut, 63 1566-1577
  • Levasseur, A., Lomascolo, A., Chabrol, O., Ruiz-Dueñas, F. J., Boukhris-Uzan, E., Piumi, F., Kües, U., Ram, A. F. J., Murat, C., Haon, M., Benoit, I., Arfi, Y., Chevret, D., Drula, E., Kwon, M. J., Gouret, P., Lesage-Meessen, L., Lombard, V., Mariette, J., Noirot, C., Park, J., Patyshakuliyeva, A., Sigoillot, J. C., Wiebenga, A., Wösten, H. A. B., Martin, F., Coutinho, P. M., de Vries, R. P., Martínez, A. T., Klopp, C., Pontarotti, P., Henrissat, B. , Record, E. (2014) The genome of the white-rot fungus Pycnoporus cinnabarinus: A basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown. BMC Genomics, 15 486.
  • Lü, F., Bize, A., Guillot, A., Monnet, V., Madigou, C., Chapleur, O., Mazéas, L., He, P. , Bouchez, T. (2014) Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity. ISME J., 8 88–102.
  • Misra, S. K., Moussan Désirée Aké, F., Wu, Z., Milohanic, E., Cao, T. N., Cossart, P., Deutscher, J., Monnet, V., Archambaud, C. , Henry, C. (2014) Quantitative proteome analyses identify PrfA-responsive proteins and phosphoproteins in Listeria monocytogenes. J Proteome Res, 13 6046–6057.
  • Poidevin, L., Berrin, J.-G., Bennati-Granier, C., Levasseur, A., Herpoël-Gimbert, I., Chevret, D., Coutinho, P. M., Henrissat, B., Heiss-Blanquet, S. , Record, E. (2014) Comparative analyses of Podospora anserina secretomes reveal a large array of lignocellulose-active enzymes. Appl. Microbiol. Biotechnol., 98 7457-7469
  • Renvoisé, M., Bonhomme, L., Davanture, M., Valot, B., Zivy, M. , Lemaire, C. (2014) Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae. J. Proteomics, 106 140–150.
  • Saadaoui, B., Bianchi, L., Henry, C., Miranda, G., Martin, P. , Cebo, C. (2014) Combining proteomic tools to characterize the protein fraction of llama (Lama glama) milk. Electrophoresis, 35 1406–1418.

Articles published in 2013

  • Albertin, W., Marullo, P., Bely, M., Aigle, M., Bourgais, A., Langella, O., Balliau, T., Chevret, D., Valot, B., da Silva, T., Dillmann, C., de Vienne, D. , Sicard, D. (2013) Linking post-translational modifications and variation of phenotypic traits. Mol Cell Proteomics, 12 720–735.
  • Arfi, Y., Chevret, D., Henrissat, B., Berrin, J.G., Levasseur, A., Recrod, E. (2013) Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp. Nat. Commun., 4:1810
  • Bidnenko, V., Shi, L., Kobir, A., Ventroux, M., Pigeonneau, N., Henry, C., Trubuil, A. , Noirot-Gros, M.-F. (2013) Bacillus subtilis serine/threonine protein kinase YabT is involved in spore development via phosphorylation of a bacterial recombinase. Mol. Microbiol., 88 921–935.
  • Blein-Nicolas, M., Albertin, w., Valot, B., Marullo, P., Sicard, D., Giraud, C., Huet, S., Bourgais, A., Dillmann, C., de Vienne, D., Zivy, V. (2013) Yeast Proteome Variations Reveal Different Adaptive Responses to Grape Must Fermentation. Mol. Biol. Evol., 30(6) 1368-83
  • Boex-Fontvieille, E., Daventure, M., Jossier, M., Zivy, M., Hodges, M. , Tcherkez, G. (2013) Photosynthetic control of Arabidopsis leaf cytoplasmic translation initiation by protein phosphorylation. PLoS ONE, 8 e70692.
  • Douché, T., Clemente, H. S., Burlat, V., Roujol, D., Valot, B., Zivy, M., Pont-Lezica, R. , Jamet, E. (2013) Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers. Proteomics, 13 2438–2454.
  • Fleuchot, B., Guillot, A., Mézange, C., Besset, C., Chambellon, E., Monnet, V. , Gardan, R. (2013) Rgg-Associated SHP Signaling Peptides Mediate Cross-Talk in Streptococci. PLoS ONE, 8 e66042.
  • Gardan, R., Besset, C., Gitton, C., Guillot, A., Fontaine, L., Hols, P. , Monnet, V. (2013) The extracellular life cycle of ComS, the competence stimulating peptide of Streptococcus thermophilus. J Bacteriol, 195 1845–1855
  • Guérinier, T., Millan, L., Crozet, P., Oury, C., Rey, F., Valot, B., Mathieu, C., Vidal, J., Hodges, M., Thomas, M. , Glab, N. (2013) Phosphorylation of p27(KIP) (1) homologs KRP6 and 7 by SNF1-related protein kinase-1 links plant energy homeostasis and cell proliferation. Plant J, 75 515–525.
  • Jolivet, P., Acevedo, F., Boulard, C., d'Andréa, S., Faure, J.-D., Kohli, A., Nesi, N., Valot, B. , Chardot, T. (2013) Crop seed oil bodies: From challenges in protein identification to an emerging picture of the oil body proteome. Proteomics, 13 1836–1849.
  • Langella, O., Valot, B., Jacob, D., Balliau, T., Flores, R., Hoogland, C., Joets, J. , Zivy, M. (2013) Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction. Proteomic, pmic.201200564
  • Li, Q., Chevalier, C., Henry, C., Richard, C.-A., Moudjou, M. , Vidic, J. (2013) Shadoo binds lipid membranes and undergoes aggregation and fibrillization. Biochem Biophys Res Commun., 438 519–525.
  • Manaa, A., Faurobert, M., Valot, B., Bouchet, J.-P., Grasselly, D., Causse, M. , Ahmed, H. B. (2013) Effect of salinity and calcium on tomato fruit proteome. OMICS, 17 338–352.
  • Martel, C., Allouche, M., Esposti, D. D., Fanelli, E., Boursier, C., Henry, C., Chopineau, J., Calamita, G., Kroemer, G., Lemoine, A. , Brenner, C. (2013) Glycogen synthase kinase 3-mediated voltage-dependent anion channel phosphorylation controls outer mitochondrial membrane permeability during lipid accumulation. Hepatology, 57 93–102.
  • Meyrand, M., Guillot, A., Goin, M., Furlan, S., Armalyte, J., Kulakauskas, S., Cortes-Perez, N. G., Thomas, G., Chat, S., Péchoux, C., Dupres, V., Hols, P., Dufrêne, Y. F., Trugnan, G. , Chapot-Chartier, M.-P. (2013) Surface proteome analysis of a natural isolate of Lactococcus lactis reveals the presence of pili able to bind human intestinal epithelial cells. Mol Cell Proteomics, 12 3935–3947.
  • Moktari, A., Blancato, V.S., Repizo, G.D., Henry, C.,, Pikis, A., Bourand, A., Alavarez, M. F., Immel, S., Mechakra-Maza, A., Hartke, A., Thompson, J., Magni, C., Deutscher, J. (2013) Enterococcus faecalis utilizes maltose by connecting two incompatible metabolic routes via a novel maltose 6'-phosphate phosphatase (MapP). Mol. Microbiol., 88 234–253
  • Saadaoui, B., Henry, C., Khorchani, T., Mars, M., Martin, P. , Cebo, C. (2013) Proteomics of the milk fat globule membrane from Camelus dromedarius. Proteomics, 13(7) 1180-4
  • Xu, J., Pascual, L., Aurand, R., Bouchet, J.-P., Valot, B., Zivy, M., Causse, M. , Faurobert, M. (2013) An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp. Proteomics, 13 3059–3063.

Articles published in 2012

  • Acevedo, F., Rubilar, M., Shene, C., Navarrete, P., Romero, F., Rabert, C., Jolivet, P., Valot, B. , Chardot, T. (2012) Seed oil bodies from Gevuina avellana and Madia sativa. J Agric Food Chem, 60 6994–7004.
  • Allouche, M., Pertuiset, C., Robert, J.-L., Martel, C., Veneziano, R., Henry, C., dein, O. S. E., Saint, N., Brenner, C. , Chopineau, J. (2012) ANT-VDAC1 interaction is direct and depends on ANT isoform conformation in vitro. Biochem Biophys Res Commun, 429 12–17.
  • Amiour, N., Imbaud, S., Clément, G., Agier, N., Zivy, M., Valot, B., Balliau, T., Armengaud, P., Quilleré, I., Cañas, R., Tercet-Laforgue, T., Hirel, B. (2012) The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. Journal Of Experimental Botany, 63 5017–5033.
  • Andriamihaja, M., Guillot, A., Svendsen, A., Hagedorn, J., Rakotondratohanina, S., Tomé, D. , Blachier, F. (2012) Comparative efficiency of microbial enzyme preparations versus pancreatin for in vitro alimentary protein digestion. Amino Acids, 10.1007/s00726-012-1373-0
  • Arc, E., Chibani, K., Grappin, P., Jullien, M., Godin, B., Cueff, G., Valot, B., Balliau, T., Job, D. , Rajjou, L. (2012) Cold Stratification and Exogenous Nitrates Entail Similar Functional Proteome Adjustments during Arabidopsis Seed Dormancy Release. J Proteome Res, 11 5418–5432.
  • Bieche, C., de Lamballerie, M., Chevret, D., Federighi, M. , Tresse, O. (2012) Dynamic proteome changes in Campylobacter jejuni 81-176 after high pressure shock and subsequent recovery. J Proteomics, 75 1144–1156.
  • Blein-Nicolas, M., Xu, H., de Vienne, D., Giraud, C., Huet, S. , Zivy, M. (2012) Including shared peptides for estimating protein abundances: A significant improvement for quantitative proteomics. Proteomics, 12 2797–2801.
  • Bonhomme, L., Valot, B., Tardieu, F. , Zivy, M. (2012) Phosphoproteome dynamics upon changes in plant water status reveal early events associated with rapid growth adjustment in maize leaves. Mol Cell Proteomics, 11(10) 957–972
  • Cebo, C., Rebours, E., Henry, C., Makhzami, S., Cosette, P.,Martin, P. (2012) Identification of major milk fat globule membrane proteins from pony mare milk highlights the molecular diversity of lactadherin across species. J Dairy Sci, 95 1085–1098.
  • Couturier, M., Navarro, D., Olivé, C., Chevret, D., Haon, M., Favel, A., Lesage-Meessen, L., Henrissat, B., Coutinho, P. M. , Berrin, J.-G. (2012) Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis. BMC Genomics, 13 57.
  • Desjardin, C., Balliau, T., Valot, B., Zivy, M., Wimel, L., Guérin, G., Cribiu, E. , Schibler, L. (2012) A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage. Proteomics, 12 1870–1874.
  • Gasmi, N., Lassoued, R., Ayed, A., Tréton, B., Chevret, D., Nicaud, J. M. , Kallel, H. (2012) Production and characterization of human granulocyte-macrophage colony-stimulating factor (hGM-CSF) expressed in the oleaginous yeast Yarrowia lipolytica. Appl Microbiol Biotechnol,96 89-101
  • Jean, N., Dumont, E., Durrieu, G., Balliau, T., Jamet, J.-L., Personnic, S. , Garnier, C. (2012) Protein expression from zooplankton communities in a metal contaminated NW mediterranean coastal ecosystem. Mar Environ Res, 80 12–26.
  • Haddad, N., Tresse, O., Rivoal, K., Chevret, D., Nonglaton, Q., Burns, C. M., Prévost, H. , Cappelier, J. M. (2012) Polynucleotide phosphorylase has an impact on cell biology of Campylobacter jejuni. Front Cell Infect Microbiol, 2 30.
  • Pierre, S., Guillot, A., Bendja, A., Sadström, C., Langella, P., Berteau. O. (2012) Thiostrepton tryptophan methyltransferase expands the chemistry of radical SAM enzymes. Nature Chem Biol. 8(12):957-9
  • Ravalason, H., Grisel, S., Chevret, D., Favel, A., Berrin, J.-G., Sigoillot, J.-C. , Herpoël-Gimbert, I. (2012) Fusarium verticillioides secretome as a source of auxiliary enzymes to enhance saccharification of wheat straw. Bioresour Technol, 114 589–596.
  • Regulski, K., Courtin, P., Meyrand, M., Claes, I. J. J., Lebeer, S., Vanderleyden, J., Hols, P., Guillot, A. , Chapot-Chartier, M.-P. (2012) Analysis of the peptidoglycan hydrolase complement of Lactobacillus casei and characterization of the major $\gamma$-D-glutamyl-L-lysyl-endopeptidase. PLoS ONE, 7 e32301.
  • Trémillon, N., Morello, E., Llull, D., Mazmouz, R., Gratadoux, J.-J., Guillot, A., Chapot-Chartier, M.-P., Monlezun, L., Solé, V., Ginisty, H. , Poquet, I. (2012) PpiA, a surface PPIase of the cyclophilin family in Lactococcus lactis. PLoS ONE, 7 e33516.

Articles published in 2011

  • Agrawal, G. K., Job, D., Zivy, M., Agrawal, V. P., Bradshaw, R. A., Dunn, M. J., Haynes, P. A., van Wijk, K. J., Kikuchi, S., Renaut, J., Weckwerth, W.,Rakwal, R. (2011) Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO). Proteomics, 11 1559–1568.
  • Aloui, A., Recorbet, G., Robert, F., Schoefs, B., Bertrand, M., Henry, C., Gianinazzi-Pearson, V., Dumas-Gaudot, E., Aschi-Smiti, S. (2011) Arbuscular mycorrhizal symbiosis elicits shoot proteome changes that are modified during cadmium stress alleviation in Medicago truncatula. BMC Plant Biology, 11 75.
  • Bernard, E., Rolain, T., Courtin, P., Guillot, A., Langella, P., Hols, P., Chapot-Chartier, M.-P. (2011) Characterization of O-acetylation of N-acetylglucosamine: A novel structural variation of bacterial peptidoglycan. J Biol Chem, 286 23950–23958.
  • Bienvenut, W. V., Espagne, C., Martinez, A., Majeran, W., Valot, B., Zivy, M., Vallon, O., Adam, Z., Meinnel, T.,Giglione, C. (2011) Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts. Proteomics, 11 1734–1750.
  • Cangahuala-Inocente, G. C., Da Silva, M. F., Johnson, J.-M., Manga, A., van Tuinen, D., Henry, C., Lovato, P. E., Dumas-Gaudot, E. (2011) Arbuscular mycorrhizal symbiosis elicits proteome responses opposite of P-starvation in SO4 grapevine rootstock upon root colonisation with two Glomus species. Mycorrhiza, 21 473–493.
  • Chat, S., Layani, S., Mahaut, C., Henry, C., Chanat, E.,Truchet, S. (2011) Characterisation of the potential SNARE proteins relevant to milk product release by mouse mammary epithelial cells. Eur J Cell Biol, 90 401–413.
  • Delumeau, O., Lecointe, F., Muntel, J., Guillot, A., Guédon, E., Monnet, V., Hecker, M., Becher, D., Polard, P., Noirot, P. (2011) The dynamic protein partnership of RNA polymerase in Bacillus subtilis. Proteomics, 11 2992–3001.
  • Dumont, E., Bahrman, N., Goulas, E., Valot, B., Sellier, H., Hilbert, J.-L., Vuylsteker, C., Lejeune-Henaut, I.,Delbreil, B. (2011) A proteomic approach to decipher chilling response from cold acclimation in pea (Pisum sativum L.). Plant Science, 180 86–98.
  • Fabret, C., Dervyn, E., Dalmais, B., Guillot, A., Marck, C., Grosjean, H.,Noirot, P. (2011) Life without the essential bacterial tRNA(Ile2) -lysidine synthetase TilS: A case of tRNA gene recruitment in Bacillus subtilis. Mol Microbiol, 80 1062–1074.
  • Fleuchot, B., Gitton, C., Guillot, A., Vidic, J., Nicolas, P., Besset, C., Fontaine, L., Hols, P., Leblond-Bourget, N., Monnet, V., Gardan, R. (2011) Rgg proteins associated with internalized small hydrophobic peptides: A new quorum-sensing mechanism in streptococci. Mol Microbiol, 80 1102–1119.
  • Ichi, S. E., Miodek, A., Sauriat-Dorizon, H., Mahy, J.-P., Henry, C., Marzouki, M. N.,Korri-Youssoufi, H. (2010) Characterization of structure and activity of garlic peroxidase (POX(1B)). J Biol Inorg Chem, 16 157–172
  • Jolivet, P., Boulard, C., Bellamy, A., Valot, B., d'Andréa, S., Zivy, M., Nesi, N.,Chardot, T. (2011) Oil body proteins sequentially accumulate throughout seed development in Brassica napus. J Plant Physiol, 168 2015–2020.
  • Ligat, L., Lauber, E., Albenne, C., Clemente, H. S., Valot, B., Zivy, M., Pont-Lezica, R., Arlat, M.,Jamet, E. (2011) Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins. Proteomics, 11 1798–1813.
  • Manaa, A., Ben Ahmed, H., Valot, B., Bouchet, J.-P., Aschi-Smiti, S., Causse, M., Faurobert, M. (2011) Salt and genotype impact on plant physiology and root proteome variations in tomato. J Exp Bot, 62(8) 2797–2813.
  • Misra, S. K., Milohanic, E., Aké, F., Mijakovic, I., Deutscher, J., Monnet, V., Henry, C. (2011) Analysis of the serine/threonine/tyrosine phosphoproteome of the pathogenic bacterium Listeria monocytogenes reveals phosphorylated proteins related to virulence. Proteomics, 11 4155–4165.
  • Thomas, M., Wrzosek, L., Ben-Yahia, L., Noordine, M.-L., Gitton, C., Chevret, D., Langella, P., Mayeur, C., Cherbuy, C. , Rul, F. (2011) Carbohydrate metabolism is essential for the colonization of Streptococcus thermophilus in the digestive tract of gnotobiotic rats. PLoS ONE, 6 e28789.
  • Valot, B., Langella, O., Nano, E., Zivy, M., (2011). MassChroQ: A versatile tool for mass spectrometry quantification. Proteomics, 11 3572–3577
  • Virlouvet, L., Jacquemot, M.-P., Gerentes, D., Corti, H., Bouton, S., Gilard, F., Valot, B., Trouverie, J., Tcherkez, G., Falque, M., Damerval, C., Rogowsky, P., Perez, P., Noctor, G., Zivy, M.,Coursol, S. (2011) The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions. Plant Physiol, 157 917–936.
  • Zhang, Y., Giboulot, A., Zivy, M., Valot, B., Jamet, E.,Albenne, C. (2011) Combining various strategies to increase the coverage of the plant cell wall glycoproteome. Phytochemistry, 72(10) 1109–1123.

Articles published in 2010

  • Beganović, J., Guillot, A., van de Guchte, M., Jouan, A., Gitton, C., Loux, V., Roy, K., Huet, S., Monod, H., Monnet, V. (2010) Characterization of the Insoluble Proteome of Lactococcus lactis by SDS-PAGE LC-MS/MS Leads to the Identification of New Markers of Adaptation of the Bacteria to the Mouse Digestive Tract. J Proteome Res, 9 677–688.
  • Bourrellier, A. B. F., Valot, B., Guillot, A., Ambard-Bretteville, F., Vidal, J., Hodges, M. (2010) Chloroplast acetyl-CoA carboxylase activity is 2-oxoglutarate-regulated by interaction of PII with the biotin carboxyl carrier subunit. Proc. Natl. Acad. Sci. U. S. A., 107 502–507.
  • Chich, J., Chapuis, C., Henry, C., Vidic, J., Rezaei, H., Noinville, S. (2010) Vesicle permeabilization by purified soluble oligomers of prion protein: a comparative study of the interaction of oligomers and monomers with lipid membranes. J. Mol. Biol., 397 1017-1030
  • Crozet, P., Jammes, F., Valot, B., Ambard-Bretteville, F., Nessler, S., Hodges, M., Vidal, J., Thomas, M. (2010) Cross-phosphorylation between Arabidopsis thaliana sucrose nonfermenting 1-related protein kinase 1 (AtSnRK1) and its activating kinase (AtSnAK) determines their catalytic activities. J Biol Chem, 285 12071–12077.
  • Daher, Z., Recorbet, G., Valot, B., Robert, F., Balliau, T., Potin, S., Schoefs, B.,Dumas-Gaudot, E. (2010) Proteomic analysis of Medicago truncatula root plastids. Proteomics, 10 2123–2137.
  • Garnier, M., Matamoros, S., Chevret, D., Pilet, M.-F., Leroi, F.,Tresse, O. (2010) Cold acclimation and cold shock proteomic responses of the psychrotrophic biopreservative Lactococcus piscium strain CNCM I-4031. Appl Environ Microbiol, 76 8011–8018.
  • Levert, M., Zamfir, O., Clermont, O., Bouvet, O., Lespinats, S., Hipeaux, M. C., Branger, C., Picard, B., Saint-Ruf, C., Norel, F., Balliau, T., Zivy, M., Le Nagard, H., Cruvellier, S., Chane-Woon-Ming, B., Nilsson, S., Gudelj, I., Phan, K., Ferenci, T., Tenaillon, O.,Denamur, E. (2010) Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal Infections. PLoS Pathog, 6 e1001125.
  • Page, D., Gouble, B., Valot, B., Bouchet, J. P., Callot, C., Kretzschmar, A., Causse, M., Renard, C. M. C. G.,Faurobert, M. (2010) Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage. Planta, 232 483–500.
  • Recorbet, G., Valot, B., Robert, F., Gianinazzi-Pearson, V.,Dumas-Gaudot, E. (2010) Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species. Fungal Genet Biol, 47 608–618.
  • Sirichandra, C., Davanture, M., Turk, B. E., Zivy, M., Valot, B., Leung, J.,Merlot, S. (2010) The Arabidopsis ABA-Activated Kinase OST1 Phosphorylates the bZIP Transcription Factor ABF3 and Creates a 14-3-3 Binding Site Involved in Its Turnover. PLoS ONE, 5. e13935
  • Swennen, D., Henry, C., Beckerich, J.-M. (2010) The folding proteome of Yarrowia lipolytica targeted with uracil permease mutants. J Proteome Res, 9 (12): 6169-6179
  • Vlad, F., Droillard, M.-J., Valot, B., Khafif, M., Rodrigues, A., Brault, M., Zivy, M., Rodriguez, P. L., Merlot, S.,Laurière, C. (2010) Phospho-site mapping, genetic and in planta activation studies reveal key aspects of the different phosphorylation mechanisms involved in activation of SnRK2s. Plant J, doi: 10.1111/j.1365-313X.2010.04281.x

Articles published in 2009

  • Albertin W., Langella O., Joets J., Négroni L., Zivy M., Damerval, C., Thiellement, H. (2009) Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus. Proteomics, 9 : 793–799.
  • Aloui A., Recorbet G., Gollotte A., Robert F., Valot B., Gianinazzi-Pearson V., Aschi-Smiti S., Dumas-Gaudot E. (2009) On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study. Proteomics, 9 : 420–433.
  • Boumahrou N., Andrey S., Miranda G., Henry C., Panthier JJ., Martin P., Bellier S. (2009) The major protein fraction of mouse milk revisited using proven proteomic tools. journal of physiology and pharmacology, 60, issue2 : 113–118.
  • Bourgeois M, Jacquin F, Savois V, Sommerer N, Labas V, Henry C, Burstin J (2009) Dissecting the proteome of pea mature seeds reveals the phenotypic plasticity of seed protein composition. Proteomics, 9 : 254-271
  • Bouyer, S., Rodier, M.-H., Guillot, A., Hechard, Y. (2009) Acanthamoeba castellanii: Proteins involved in actin dynamics, glycolysis, and proteolysis are regulated during encystation. Exp Parasitol., 123 90–94.
  • Dressaire, C., Gitton, C., Loubiere, P., Monnet, V., Queinnec, I., Cocaign-Bousquet, M. (2009) Transcriptome and Proteome Exploration to Model Translation Efficiency and Protein Stability in Lactococcus lactis. PLOS Computational Biology, 5 : e1000606
  • Duquerroy S., Da Costa B . , Henry C., Vigouroux A, Libersou S., Lepault J., Navaza J.,Delmas B., Rey F.(2009). The picobirnavirus crystal structure provides functional insights into virion assembly and cell entry. EMBO Journal, 28 : 1655-1665
  • Frottin F., Espagne C., Traverso J. A., Mauve C., Valot B., Lelarge-Trouverie C., Zivy M., Noctor, G., Meinnel, T. & Giglione, C. (2009) Cotranslational proteolysis dominates glutathione homeostasis to support proper growth and development. Plant Cell, 21 3296–3314.
  • Gardan, R., Besset, C., Guillot, A., Gitton, C. & Monnet, V. (2009) The oligopeptide transport system is essential for the development of natural competence in Streptococcus thermophilus strain LMD-9. J Bacteriol, 191 : 4647-4655.
  • Roman, Y., Bed'Hom, B., Guillot, A., Levrier, J., Chaste-Duvernoy, D., Bomsel-Demontoy, M.-C., Jalme, M. S.(2009) Identification of apolipoprotein A-I in the alpha-globulin fraction of avian plasma. Vet Clin Pathol, 38 : 206-212.
  • Sirichandra C., Gu D., Hu H.-C., Davanture M., Lee S., Djaoui M., Valot B., Zivy M., Leung J., Merlot S., Kwak J. M. (2009) Phosphorylation of the Arabidopsis AtrbohF NADPH oxidase by OST1 protein kinase. FEBS Lett, 583 2982–2986.
  • Tran, T.-L., Castagné, N., Dubosclard, V., Noinville, S., Koch, E., Moudjou, M., Henry, C., Bernard, J., Yeo, R. P., Eléouët, J.-F. (2009) The Respiratory syncytial virus M2-1 protein forms tetramers and interacts with RNA and P in a competitive manner. J Virol, 83(13) : 6363–6374

Articles published in 2008

  • Bouillaut L, Perchat S, Arold S, Zorilla S, Slamti L, Henry C, Gohar M, Declerck N, Lereclus D (2008) Molecular basis for group-specific activation of the virulence regulator PlcR by PapR heptapeptides. Nucleic Acids Research, 36 : 3791-3801
  • Garcia-Verdugo I, Synguelakis M, Degrouard J, Franco CA, Valot B, Zivy M, Chaby R, Tanfin Z (2008) Interaction of surfactant protein A with the intermediate filaments desmin and vimentin. Biochemistry, 47 : 5127-38
  • Langella O., Zivy M. (2008) A method based on bead flows for spot detection on 2-D gel images. Proteomics, 8 4914–4918.
  • Martinez A, Traverso JA, Valot B, Ferro M, Espagne C, Ephritikhine G, Zivy M, Giglione C, Meinnel T (2008) Extent of N-terminal modifications in cytosolic proteins from eukaryotes. Proteomics, 8 : 2809 - 2831
  • Nobiron I, Galloux M, Henry C, Torhy C, Boudinot P, Lejal N, Da Costa B.and Delmas B (2008) Genome and polypeptides characterization of Tellina virus 1 reveals a fifth genetic cluster in the Birnaviridae family. Virology, 371 : 350-361

Articles published in 2007

  • Albertin W, Alix K, Balliau T, Brabant P, Davanture M, Malosse C, Valot B, Thiellement H (2007) Differential regulation of gene products in newly synthesized Brassica napus allotetraploids is not related to protein function nor subcellular localization. BMC Genomics, 8 : 56
  • Benjdia, A, Leprince, J, Guillot, A, Vaudry, H, Rabot, S, Berteau, O (2007) Anaerobic sulfatase-maturating enzymes: radical SAM enzymes able to catalyze in vitro sulfatase post-translational modification. J Am Chem Soc, 129 : 3462-63
  • Debat HO, Eloit C, Blon F, Sarazin B, Henry C, Huet JC, Trottier, D, Pernollet, JC (2007) Identification of Human Olfactory Cleft Mucus Proteins Using Proteomic Analysis. Journal of Proteome Research, 6 : 1985-1996
  • Espagne C, Martinez A, Valot B, Meinnel, Giglione C (2007) Alternative and effective proteomic analysis in Arabidopsis. Proteomics, 7 : 3788-99
  • Faurobert M, Mihr C, Bertin N, Pawlowski T, Negroni L, Sommerer N, Causse M (2007) Major proteome variations associated with cherry tomato pericarp development and ripening. Plant Physiol, 143 : 1327-46
  • Fontaine L, Boutry C, Guédon E, Guillot A, Ibrahim M, Grossiord B, Hols P (2007) Quorum-Sensing regulation of the production of Blp bacteriocins in Streptococcus thermophilus. Journal of Bacteriol, 189 : 7195-7205
  • Gallardo K, Firnhaber C, Zuber H, Héricher D, Belghazi M, Henry C, Küster H, Thompson R (2007) A combined proteome and transcriptome analysis of developing medicago truncatula seeds: Evidence for metabolic specialization of maternal and filial tissues. Molecular and Cellular Proteomics, 6 : 2165-2179
  • Ibrahim M, Guillot A, Wessner F, Algaron F, Besset C, Courtin P, Gardan R, Monnet V (2007) The control of the transcription of a short gene encoding a 1 cyclic peptide in Streptococcus thermophilus: a new quorum sensing system?. Journal of Bacteriol, 189 : 8844-8854
  • Meimoun P, Ambard-Bretteville F, Colas-des Francs-Small C, Valot B, Vidal J (2007) Analysis of plant phosphoproteins. Anal Biochem, 371 : 238-46
  • Meyrand M, Boughammoura A, Courtin P, Mézange C, Guillot A, Chapot-Chartier M-P (2007) Peptidoglycan N-acetylglucosamine deacetylation decreases autolysis in Lactococcus lactis. Microbiology, 153 : 3275-3285
  • Minic Z, Jamet E, Négroni L, Arsene der Garabedian P, Zivy M, Jouanin L (2007) A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases. J Exp Bot, 58 : 2503-12

Articles published in 2006

  • Albertin W, Balliau T, Brabant P, Chevre A-M, Eber F, Malosse C, Thiellement H (2006) Numerous and Rapid Nonstochastic Modifications of Gene Products in Newly Synthesized Brassica napus Allotetraploids. Genetics, 173 : 1101-1113
  • Athenstaedt K, Jolivet P, Boulard C, Zivy M, Negroni L, Nicaud JM, Chardot T (2006) Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source. Proteomics, 6 : 1450-9
  • Berteau O, Guillot A, Benjdia A, Rabot S (2006) A new type of bacterial sulfatases reveals a novel maturation pathway in prokaryotes. J Biol Chem, 281 : 22464-70
  • Courtin P, Miranda G, Guillot A, Wessner F, Mezange C, Domakova E, Kulakauskas S, Chapot-Chartier MP (2006) Peptidoglycan Structure Analysis of Lactococcus lactis Reveals the Presence of an L,D-Carboxypeptidase Involved in Peptidoglycan Maturation. J Bacteriol, 188 : 5293-8
  • Heberden C, Reine F, Grosse B, Henry C, Zagar Y, Chaumaza G, Lieberherr, M (2006) Detection of a raft-located estrogen receptor-like protein distinct from alpha ER. Int J Biochem Cell Biol, 38 : 376-391
  • Martin A, Lee J, Kichey T, Gerentes D, Zivy M, Tatout C, Dubois F, Balliau T, Valot B, Davanture M, Tercé-Laforgue T, Quilleré I, Coque M, Gallais A, Gonzalez-Moro MB, Bethencourt L, Habash DZ, Lea PJ, Charcosset A, Perez P, Murigneux A, Sakakibara H, Edwards KJ, Hirel B. (2006) Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell, 18 : 3252-3274
  • Sorin C, Negroni L, Balliau T, Corti H, Jacquemot M-P, Davanture M, Sandberg G, Zivy M, Bellini C (2006) Proteomic Analysis of Different Mutant Genotypes of Arabidopsis Led to the Identification of 11 Proteins Correlating with Adventitious Root Development. Plant Physiol, 140 : 349-364
  • Tauveron G, Slomianny C, Henry C, Faille C (2006) Variability among Bacillus cereus strains in spore surface properties and influence on their ability to contaminate food surface equipment. Int J Food Microbiol, 110 : 254-262
  • Valot B, Negroni L, Zivy M, Gianinazzi S, Dumas-Gaudot E (2006) A mass spectrometric approach to identify arbuscular mycorrhiza-related proteins in root plasma membrane fractions. Proteomics, 6 : 145-55

Articles published in 2005

  • Chevalier C, Galloux M, Pous J, Henry C, Denis J, Da Costa B, Navaza J, Lepault J, Delmas B (2005) Structural Peptides of a Nonenveloped Virus Are Involved in Assembly and Membrane Translocation. J Virol, 79 : 12253-63
  • Ferry-Dumazet H, Houel G, Montalent P, Moreau L, Langella O, Negroni L, Vincent D, Lalanne C, de Daruvar A, Plomion C, et al. (2005) PROTICdb: A web-based application to store, track, query, and compare plant proteome data. Proteomics, 5 : 2069-2081
  • Gion JM, Lalanne C, Le Provost G, Ferry-Dumazet H, Paiva J, Chaumeil P, Frigerio JM, Brach J, Barre A, de Daruvar A, et al. (2005) The proteome of maritime pine wood forming tissue. Proteomics, 5 : 3731-3751
  • Gitton C, Meyrand M, Wang J, Caron C, Trubuil A, Guillot A, Mistou, MY (2005) Proteomic signature of Lactococcus lactis NCDO763 cultivated in milk. Appl Environ Microbiol, 71 : 7152-7161
  • Vincent D, Lapierre C, Pollet B, Cornic G, Negroni L, Zivy M (2005) Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation. Plant Physiol, 137 : 949-960
  • Wang Y, Delettre J, Guillot A, Corrieu G, Béal C (2005) Influence of cooling temperature and duration on cold adaptation of Lactobacillus acidophilus RD758. Cryobiology, 50 : 294-307

Articles published in 2004

  • Bahrman N, Le Gouis J, Negroni L, Amilhat L, Leroy P, Laine AL, Jaminon O (2004) Differential protein expression assessed by two-dimensional gel electrophoresis for two wheat varieties grown at four nitrogen levels. Proteomics, 4 : 709-719
  • Bahrman N, Negroni L, Jaminon O, Le Gouis J (2004) Wheat leaf proteome analysis using sequence data of proteins separated by two-dimensional electrophoresis. Proteomics, 4 : 2672-2684
  • Castagne N, Babier A, Bernard J, Rezaie H, Huet JC, Henry C, Da Costa B, Eleouet JF (2004) Biochemical characterization of the respiratory syncytial virus P-P and P-N protein complexesand localization of the P protein oligomerizationdomain. J Gen Virol, 85 : 1643-1653
  • Fievet J, Dillmann C, Lagniel G, Davanture M, Negroni L, Labarre J, de Vienne D (2004) Assessing factors for reliable quantitative proteomics based on two-dimensional gel electrophoresis. Proteomics, 4 : 1939-1949
  • Galloux M, Chevalier C, Henry C, Huet JC, Da Costa B,Delmas B (2004) Peptides resulting from the pVP2 C-terminal processing are present in infectious pancreaticnecrosis virus particles. J Gen Virol, 85 : 2231-36
  • Jolivet P, Roux E, d'Andrea S, Davanture M, Negroni L, Zivy M, Chardot T (2004) Protein composition of oil bodies in Arabidopsis thaliana ecotype WS. Plant Physiol Biochem, 42 : 501-509
  • Mechin V, Balliau T, Chateau-Joubert S, Davanture M, Langella O, Negroni L, Prioul JL, Thevenot C, Zivy M, Damerval C (2004) A two-dimensional proteome map of maize endosperm. Phytochem, 65 : 1609-1618
  • Schiltz S, Gallardo K, Huart M, Negroni L, Sommerer N, Burstin J (2004) Proteome reference maps of vegetative tissues in pea. An investigation of nitrogen mobilization from leaves during seed filling. Plant Physiol, 135 : 2241-2260

Articles published in 2003

  • Da Costa B, Soignier S, Chevalier C, Henry C, Thory C, Huet JC, Delmas B (2003) Blotched snakehead virus is a new aquatic birnavirus that is slightly more related to avibirnavirus than to aquabirnavirus. J Virol, 77 : 719–725
  • Guillot A, Gitton C, Anglade P, Mistou MY (2003) Proteomic analysis of Lactococcus lactis, a lactic acid bacterium. Proteomics, 3 : 337-354
  • Quemener B, Desire C, Lahaye M, Debrauwer L, Negroni L (2003) Structural characterisation by both positive- and negative-ion electrospray mass spectrometry of partially methyl-esterified oligogalacturonides purified by semi-preparative high-performance anion-exchange chromatography. Eur J Mass Spectrom, 9 : 45-60

Articles published in 2002

  • Briand L, Eloit C, Nespoulous C, Bezirard V, Huet JC, Henry C, Blon F, Trotier D, Pernollet JC (2002) Evidence of an odorant-binding protein in the human olfactory mucus : location, structural characterization, and odorant-binding properties. Biochemistry, 41 : 7241-7252
  • Da Costa B, Chevalier C, Henry C, Huet JC, Petit S, Lepault J, Boot H, Delmas B (2002) The capsid of infectious bursal disease virus contains several small peptides arising from the maturation process of Pvp2. Journal of Virology, 76 : 2393-2402
  • Cencic A, Henry C, Lefevre F, Huet JC, Koren S, La Bonnardiere C (2002) The porcine trophoblastic interferon-g, secreted by a polarized epithelium, has specific structural and biochemical properties. Europ J Biochem, 269 : 2772-2781

Articles published in 2001

  • Briand L, Lescop E, Bezirard V, Birlikaris N, Huet JC, Henry C, Guittet E, Pernollet JC (2001) Isotopic double-labeling of 2 honeybee odorant-binding proteins secreted by the methylotrophic yeast Pichia pastoris. Protein Expression and Purification, 23 : 167-174

Articles published in 2000

  • Vu-Hai M, Huet JC, Echasserieau K, Bidart JM, Floiras C Henry C, Pernollet JC, Milgrom E (2000) Postranslational modifications of the lutropin receptor : mass spectrometric analysis. Biochemistry, 39 : 5509-5517

Articles published in book chapters

  • Zivy M, Joyard J, Rossignol M (2007). Proteomics. In Morot-Gaudry JF, Lea P, Briat, JF (Eds.), “Functional Plant Genomics”, Science Publishers, pp 217-244
  • Langella O, Zivy M, Joets J (2006). The PROTICdb Database for 2-DE Proteomics. In Thiellement H, Zivy M, Damerval C and Méchin V (Eds.), “Plant Proteomics: Methods and Protocols”, Humana press, Totowa, New Jersey, U.S.A, pp 279-304
  • Méchin V, Damerval C, Zivy M (2006). Total protein extraction with TCA-acetone. In Thiellement H, Zivy M, Damerval C and Méchin V (Eds.), “Plant Proteomics: Methods and Protocols”, Humana press, Totowa, New Jersey, U.S.A, pp 1-8
  • Zivy M (2006). Quantitative Analysis of 2D Gels. In Thiellement H, Zivy M, Damerval C and Méchin V (Eds.), “Plant Proteomics: Methods and Protocols”, Humana press, Totowa, New Jersey, U.S.A, pp 175-194

Articles published thanks to platform analyses

Articles published in 2013

  • Schlosser, S., Leitsch, D. , Duchêne, M. (2013) Entamoeba histolytica: Identification of thioredoxin-targeted proteins and analysis of serine acetyltransferase-1 as a prototype example. Biochem J, 451 277–288.

Articles published in 2012

  • Maîtrepierre, E., Sigoillot, M., Le Pessot, L. , Briand, L. (2012) Recombinant expression, in vitro refolding, and biophysical characterization of the N-terminal domain of T1R3 taste receptor. Protein Expr Purif, 83 75–83.
  • Poirier, N., Roudnitzky, N., Brockhoff, A., Belloir, C., Maison, M., Thomas-Danguin, T., Meyerhof, W. , Briand, L. (2012) Efficient production and characterization of the sweet-tasting brazzein secreted by the yeast Pichia pastoris. J Agric Food Chem, 60 9807–9814.
  • Sigoillot, M., Brockhoff, A., Lescop, E., Poirier, N., Meyerhof, W. , Briand, L. (2012) Optimization of the production of gurmarin, a sweet-taste-suppressing protein, secreted by the methylotrophic yeast Pichia pastoris. Appl Microbiol Biotechnol, 96 1253–1263.

Articles published in 2010

  • Benjdia, A., Subramanian, S., Leprince, J., Vaudry, H., Johnson, M. K., Berteau, O. (2010) Anaerobic sulfatase-maturating enzyme - A mechanistic link with glycyl radical-activating enzymes? FEBS Journal, 277 1906–1920.
  • Chevalier, C., Bazzal, A. A., Vidic, J., Février, V., Bourdieu, C., Bouguyon, E., Goffic, R. L., Vautherot, J.-F., Bernard, J., Moudjou, M., Noinville, S., Chich, J.-F., Costa, B. D., Rezaei, H., Delmas, B. (2010) PB1-F2 influenza A virus protein adopts a beta-sheet conformation and forms amyloid fibers in membrane environments. J Biol Chem, 285 13233–13243.

Articles published in 2009

  • Dumont E., Fontaine V., Vuylsteker C., Sellier H., Bodèle S., Voedts N., Devaux, R., Frise M., Avia K., Hilbert J.-L., Bahrman N., Hanocq E., Lejeune-Hénaut I., Delbreil B. (2009) Association of sugar content QTL and PQL with physiological traits relevant to frost damage resistance in pea under field and controlled conditions. Theor Appl Genet, 118 1561–1571.

Articles published in 2008

  • Benjdia A, Subramanian S, Leprince J, Vaudry H, Johnson MK, Berteau O. (2008) Anaerobic sulfatase-maturating enzymes, first dual substrate radical S-adenosylmethionine enzymes. J Biol Chem. 27:17815-26.
  • Fernandez A, Ogawa J, Penaud S, Boudebbouze S, Ehrlich S D, van de Guchte M, Maguin E (2008) Rerouting of pyruvate metabolism during acid adaptation in Lactobacillus bulgaricus. Proteomics 8: 3154–3163.
  • Gohar M, Faegri K, Perchat S, Ragnum S, Økstad O E, Gominet M, Gilois N, Kolstø A B, Lereclus D (2008) The PlcR Virulence Regulon of Bacillus cereus. PLoS One, 3:e2793
  • Lavialle F, Chanat E (2008) Lipid-deprived diet perturbs O-glycosylation of secretory proteins in rat mammary epithelial cells. Animal, 2 : 491–499
  • Sanchez B, Champomier-Vergès MC, Anglade P, Baraige F, de los Reyes-Gavilán CG, Margolles A, Zagorec M (2008) Analysis of Bifidobacterium longum exported proteins by 2D electrophoresis. Journal of Molecular Microbiology and Biotechnology, 14 : 74-79

Articles published in 2007

  • Benjdia A, Dehò G, Rabot S, Berteau O. (2007) First evidences for a third sulfatase maturation system in prokaryotes from E.coli aslB and ydeM deletion mutants.
  • FEBS Lett.
  • 6:1009-14.
  • Sanchez B, Champomier-Vergès MC, Stuer-Lauridsen B, Ruas-Madiedo P, Anglade P, Baraige F, de los Reyes-Gavilan CG, Johanssen E, Zagorec M, Margolles A (2007) Adaptation and response of Bifidobacterium animalis subsp. lactis to bile: a proteomic and physiological approach. Applied Environmental Microbiology, 23 : 6757-6767
  • Sanchez B, Champomier-Vergès MC, del Carmen Collado M, Anglade P, Baraige f, Sanz Y, de los Reyes-Gavilan CG, Margolles A, Zagorec M (2007) Low pH adaptation and the acid tolerance response of Bifibobacterium longum biotype longum. Applied Environmental Microbiology, 73 : 6450-6459
  • Jofré A, Champomier-Vergès MC, Anglade P, Baraige F, Martín B, Garriga M, Zagorec M, Aymerich T (2007) Protein synthesis in lactic acid and pathogenic bacteria during recovery from a high pressure treatment. Research in Microbiology, 158 : 512-520
  • Dziembowski A, Lorentzen E, Conti E, Séraphin B (2007) A single subunit, Dis3, is essentially responsible for yeast exosome core activity. Nature Structural and Molecular Biology, 14 : 15-22
  • Mortier-Barriere I, Velten M, Dupaigne P, Mirouze N,Piètrement O, McGovern S, Fichant G, Martin B, Noirot P, Le Cam E, Polard P, Claverys JP (2007) A Key Presynaptic Role in Transformation for a Widespread Bacterial Protein: DprA Conveys Incoming ssDNA to RecA. Cell, 130 : 824–836
  • Lecointe F, Sérèna C, Velten M, Costes A, McGovern S, Meile JC, Errington J, Ehrlich SD, Noirot P, Polard P (2007) Anticipating chromosomal replication fork arrest: SSB targets repair DNA helicases to active forks. The EMBO Journal, 26 : 4239-51
  • Gilois N, Ramarao N, Bouillaut L, Lereclus D, Gohar M, (2007) Growth-related variations in the Bacillus cereus secretome. Proteomics, 7 : 1719-1728
  • Budin-Verneuil A, Pichereau V, Auffray Y, Ehrlich D, Maguin E (2007) Proteome phenotyping of acid stress-resistant mutants of Lactococcus lactis MG1363. Proteomics, 7 : 2038-46

Articles published in 2006

  • Bouguyon E, Beauvallet C, Huet JC, Chanat E (2006) Disulphide bonds in casein micelle from milk. Biochem Biophys Res Commun, 343 : 450-8
  • Amiour N, Recorbet G, Robert F, Gianinazzi S, Dumas-Gaudot E (2006) Mutations in DMI3 and SUNN Modify the Appressorium-Responsive Root Proteome in Arbuscular Mycorrhiza. MPMI, 19 : 988–997
  • Tcatchoff L, Nespoulous C, Pernollet JC, Briand L (2006) A single lysyl residue defines the binding specificity of a human odorant-binding protein for aldehydes. FEBS letters, 580 : 2102-2108
  • Diab F, Bernard T, Bazir A, Haras D, Blanco C, Jebbar M (2006) Succinate-mediated catabolite repression control on the production of glycine betaine catabolic enzymes in Pseudomonas aeruginosa PAO1 under low and elevated salinities. Microbiology, 152 : 1395–1406

Articles published in 2005

  • Bouillaut L, Buisson C, Ramarao N, Gilois N, Gohar M, Lereclus D, Nielsen-Leroux C (2005) FlhA influences PlcR regulated genes transcription, protein production and virulence. Appl. Environ. Microbiol., 71:8903-8910.
  • Pineau B, Mathieu C, Gérard-Hirne C, De Paepe R, Chétrit P (2005) Targeting the NAD7 subunit to mitochondria restores a functional complex I and a wild type phenotype in the Nicotina sylvestris CMS II mutant lacking nad7. Journal of Biological Chemistry, 280 : 25994-26001
  • Gohar M, Gilois N, Graveline R, Garreau C, Sanchis V, Lereclus D (2005) A comparative study of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis extracellular proteomes. Proteomics, 5 : 3696-3711
  • Budin-Verneuil A, Pichereau V, Auffray Y, Ehrlich D, Maguin E (2005) Proteomic characterization of the acid tolerance response il Lactococcus lactis MG1363. Proteomics, 5 : 4794-4807
  • Jebbar M, Sohn-Bosser L, Bremer E, Bernard T, Blanco C (2005) Ectoine-induced proteins in Sinorhizobium meliloti include an Ectoine ABC-type transporter involved in osmoprotection and ectoine catabolism. J Bacteriol, 187 : 1293-304
  • Sanchez B, Champomier-Vergès MC, Anglade P, Baraige F, de los Reyes-Gavilan CG, Margolles A, Zagorec M (2005) Proteomic analysis of global change in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809. Journal of Bacteriology, 187 : 5799-5808

Articles published in 2004

  • Castillejo MA, Amiour N, Dumas-Gaudot E, Rubiales D, Jorrin JV (2004) A proteomic approach to studying platn response to crenate broomrape (Orobanche crenata) in pea (Pisum sativum). Phytochemistry, 65 : 1817-1828
  • Dumur J, Jahier J, Bancel E, Laurière M, Bernard M, Branlard G (2004) Proteomic analysis of aneuploid lines in the homeologous group 1 of the hexaploid wheat cultivar Courtot. Proteomics, 4 : 2685-2695
  • Majoul T, Bancel E, Triboï E, Ben Hamida J, Branlard G (2004) Proteomic analysis of the effect of heat stress on hexaploid wheat grain: characterization of heat-responsive proteins from non-prolamins fraction. Proteomics, 4 : 505-513
  • Slamti L, Perchat S, Vilas-Boas G, Gominet M, Fouet A, Mock M, Sanchis V, Chaufaux J, Gohar M, Lereclus D (2004) Distinct mutations in the pleiotropic regulator PlcR explain why some strains in the Bacillus cereus group are non-hemolytic.
  • J. Bacteriol.
  • , 186:3531-3538.
  • Valot B, Gianinazzi S, Dumas-Gaudot E 2004 Sub-cellular proteomic analysis of a Medicago truncatula root microsomal fraction. Phytochemistry, 65 : 1721-1732

Articles published in 2003

  • Velten M, McGovern S, Marsin S, Ehrlich SD, Noirot P, Polard P (2003) A two-protein strategy for the functional loading of a cellular replicative DNA helicase. Molecular Cell, 11 : 1009-1020
  • Fedhila S., Gohar M., Slamti L., Nel P., Lereclus D., 2003 The Bacillus thuringiensis PlcR-regulated gene inhA2 is necessary, but not sufficient, for virulence. J. Bacteriol. 185: 2820-2825.
  • Majoul T, Bancel E, Triboï E, Ben Hamida J, Branlard G (2003) Proteomic analysis of the effect of heat stress on hexaploid wheat grain: Characterization of heat-responsive proteins from total endosperm. Proteomics, 3 : 175-183

Articles published in 2002

  • Gohar M, Okstad OA, Gilois N, Sanchis V, Kolstø AB, Lereclus D, (2002) Two-dimensional electrophoresis analysis of the extracellular proteome of Bacillus cereus reveals the importance of the PlcR regulon. Proteomics, 2 : 784-91
  • Collier J, Binet E, Bouloc P (2002) Competition between SsrA tagging and translational termination at weak stop codons in Escherichia coli. Molecular Microbiology, 45 : 745-54
  • Amiour N, Merlino M, Leroy P, Branlard G (2002) Proteomic analysis of amphiphilic proteins of hexaploid wheat kernels. Proteomics, 2 : 632–641