.envrc
.gitattributes
.gitignore
LICENSE
README.md
filter_param.json
pixi.lock
pixi.toml
run_scan_report_and_filter_fdr.sh
setup.py
stdeb.cfg
.gram/tasks.jsonc
cli/psmcbor2json.py
cli/psmcbor2mzcbor.py
cli/psmcbor2ods.py
cli/psmcbor2psimod.py
cli/psmcbor2scanreport.py
cli/psmcborfilter.py
cli/psmcborms2pip.py
data/sage/small/results.json
data/sage/small/results.sage.tsv
data/sage/small/sage_output.cbor
data/sage/small/small_sample_troncated/sage_output.txt
data/sage/small/small_sample_troncated/sage_output_sample_20120906_balliau_extract_1_A07_tca1-2.txt
data/sage/small/with_rev/results.json
data/sage/small/with_rev/results.sage.tsv
data/sage/small/with_rev/sage_output.json
data/sage/small/with_rev/sage_output_with_rev.cbor
data/spoms/small/psmcbor_spoms_filter_params.json
data/spoms/small/readme.md
data/spoms/small/small_balliau_spoms_treshloc_06.cbor
data/spoms/small/small_balliau_spoms_treshloc_06.json
pypsmcbor/__init__.py
pypsmcbor/comparsample.py
pypsmcbor/enums.py
pypsmcbor/fastasequence.py
pypsmcbor/identificationdataset.py
pypsmcbor/protein.py
pypsmcbor/proteinmap.py
pypsmcbor/proteinref.py
pypsmcbor/psm.py
pypsmcbor/sample.py
pypsmcbor/scan.py
pypsmcbor/scanid.py
pypsmcbor/scanpair.py
pypsmcbor.egg-info/PKG-INFO
pypsmcbor.egg-info/SOURCES.txt
pypsmcbor.egg-info/dependency_links.txt
pypsmcbor.egg-info/requires.txt
pypsmcbor.egg-info/top_level.txt
pypsmcbor/data/typst/__init__.py
pypsmcbor/data/typst/global_report.typ
pypsmcbor/data/typst/mz_delta_plot.typ
pypsmcbor/data/typst/psm_report.typ
pypsmcbor/data/typst/psm_report_svg.typ
pypsmcbor/harvest/__init__.py
pypsmcbor/harvest/harvest_psmcbor.py
pypsmcbor/ods/__init__.py
pypsmcbor/ods/ods_all_tables.py
pypsmcbor/ods/ods_informations.py
pypsmcbor/ods/ods_ms_delta.py
pypsmcbor/ods/ods_protein.py
pypsmcbor/ods/ods_sample_scan.py
pypsmcbor/peaks/__init__.py
pypsmcbor/peaks/peakscomparsample.py
pypsmcbor/peaks/peakspeptidepsm.py
pypsmcbor/peaks/peakspeptidesample.py
pypsmcbor/peaks/peakspeptidescan.py
pypsmcbor/peaks/peakspeptidetable.py
pypsmcbor/peaks/peaksscanpair.py
pypsmcbor/pepxml/pepxmlparser.py
pypsmcbor/proforma/__init__.py
pypsmcbor/proforma/proforma.py
pypsmcbor/stream/__init__.py
pypsmcbor/stream/ms2pipeval.py
pypsmcbor/stream/proformamodreplace.py
pypsmcbor/stream/psmcborpsmfilter.py
pypsmcbor/stream/psmcborreplacer.py
pypsmcbor/stream/psmcborstreamin.py
pypsmcbor/stream/psmcborstreamout.py
pypsmcbor/typst/__init__.py
pypsmcbor/typst/json_scan_report.py
pypsmcbor/utils/__init__.py
pypsmcbor/utils/aa_mass_delta_distribution.py
pypsmcbor/utils/ms_delta.py
pypsmcbor/utils/sample_ms2_distribution.py
tests/no_test_grouping.py
tests/test_cborstreamdec.py
tests/test_compar_samples.py
tests/test_dataset.py
tests/test_json_for_typst.py
tests/test_mass_precision.py
tests/test_ms2pip.py
tests/test_mzml_parser.py
tests/test_ods_output.py
tests/test_parse_peaks_csv.py
tests/test_peaks_compar.py
tests/test_peakspeptidetable.py
tests/test_protein.py
tests/test_proteinmap.py
tests/test_psm.py
tests/test_psm_filter.py
tests/test_rank_psm_list.py
tests/test_replace_mod.py
tests/test_sample.py
tests/test_scan.py
tests/test_scanpair.py
tests/test_yield_protein.py
tests/test_yield_sample_scan.py