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CMakeLists.txt
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CMakeStuff/outputColors.cmake
CMakeStuff/systemUname.cmake
CMakeStuff/tests-config.h.cmake.in
CMakeStuff/modules/FindQuaZip.cmake
CMakeStuff/modules/UseTYPST.cmake
CMakeStuff/toolchains/apple-macport-toolchain.cmake
CMakeStuff/toolchains/mxe-toolchain-olivier.cmake
CMakeStuff/toolchains/mxe-toolchain.cmake
CMakeStuff/toolchains/unix-toolchain-local.cmake
CMakeStuff/toolchains/unix-toolchain.cmake
CMakeStuff/toolchains/win10-mingw64-toolchain.cmake
debian/changelog
debian/compat
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debian/copyright
debian/grouping-protein.install
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doc/CMakeLists.txt
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doc/groupingprotein_diann.md
doc/reflexion_mcqr_write_diann.md
doc/script_gp_batch.txt
doc/tutoriel_groupingprotein.Rmd
doc/typst/grouping.json
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oldcode/fastaSqlite.py
oldcode/tsvReader.py
pygroupingprotein/__init__.py
pygroupingprotein/gp-fdr-peptide.py
pygroupingprotein/gp-read-pepXML.py
pygroupingprotein/gpoutputdiannmcqr.py
pygroupingprotein/gpoutputpeptidecounting.py
pygroupingprotein/gpoutputpeptidelist.py
pygroupingprotein/gpoutputproteincounting.py
pygroupingprotein/gpoutputproteinlist.py
pygroupingprotein/gpreaddiann.py
pygroupingprotein/gpreadxtandem.py
pygroupingprotein/ruff.toml
pygroupingprotein.egg-info/PKG-INFO
pygroupingprotein.egg-info/SOURCES.txt
pygroupingprotein.egg-info/dependency_links.txt
pygroupingprotein.egg-info/entry_points.txt
pygroupingprotein.egg-info/requires.txt
pygroupingprotein.egg-info/top_level.txt
pygroupingprotein/diannReader/__init__.py
pygroupingprotein/diannReader/configDiann.py
pygroupingprotein/diannReader/parquetReader.py
pygroupingprotein/diannReader/reportLog.py
pygroupingprotein/utils/UNIMOD.py
pygroupingprotein/utils/__init__.py
pygroupingprotein/utils/diannParam.py
pygroupingprotein/utils/enzyme.py
pygroupingprotein/utils/fastadigested.py
pygroupingprotein/utils/parquetHandler.py
pygroupingprotein/utils/parse_unimod.py
pygroupingprotein/utils/proForma.py
pygroupingprotein/utils/tsvHandler.py
pygroupingprotein/utils/unimod.csv
pygroupingprotein/xmlstreamwriter/__init__.py
pygroupingprotein/xmlstreamwriter/error.py
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src/cpp/bin/gpcborgrouping.cpp
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src/cpp/bin/gpcreatefasta.cpp
src/cpp/bin/gpcreatefasta.h
src/cpp/bin/gpfdrfilter.cpp
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src/cpp/bin/gpfdrpeptide.cpp
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src/cpp/bin/gpoutputmasschroq.cpp
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src/cpp/bin/gpoutputproticdbml.cpp
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src/cpp/bin/mzidtocborcli.cpp
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src/cpp/core/groupingmonitor.cpp
src/cpp/core/groupingmonitor.h
src/cpp/core/pg_utils.cpp
src/cpp/core/pg_utils.h
src/cpp/core/psmcborgrouping.cpp
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src/cpp/core/filter/fasta_filter.cpp
src/cpp/core/filter/fasta_filter.h
src/cpp/core/filter/peptide_by_prot_filter.cpp
src/cpp/core/filter/peptide_by_prot_filter.h
src/cpp/core/filter/peptide_repro_filter.cpp
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src/cpp/core/identification/peptide.cpp
src/cpp/core/identification/peptide.h
src/cpp/core/identification/peptide_set.cpp
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src/cpp/core/identification/sample.cpp
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src/cpp/input/groupinghandler.cpp
src/cpp/input/groupinghandler.h
src/cpp/input/groupinghandlermasschroq.cpp
src/cpp/input/groupinghandlermasschroq.h
src/cpp/input/peptide_result_parser.cpp
src/cpp/input/peptide_result_parser.h
src/cpp/input/peptideresultsngreader.cpp
src/cpp/input/peptideresultsngreader.h
src/cpp/input/peptideresultsqvaluehandler.cpp
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src/cpp/input/xtandemsaxhandler.cpp
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src/cpp/output/protein_grouping_result.cpp
src/cpp/output/protein_grouping_result.h
src/cpp/output/proticdbml.cpp
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test/.Rhistory
test/no_test_parquetHandler.py
test/no_test_translateDiannUnimodToMassAminoFormat.py
tests/asr1_digested_peptides.txt
tests/asr1_digested_peptides_filter.txt
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win64/work.cmake