pappso::MassSpectrumCombiner Class Reference

#include <massspectrumcombiner.h>

Inheritance diagram for pappso::MassSpectrumCombiner:

Signals
void	binCountChanged ()

Public Member Functions
	MassSpectrumCombiner (QObject *parent_p=nullptr)
	Construct an uninitialized instance.
	MassSpectrumCombiner (int decimal_places, QObject *parent_p=nullptr)
	MassSpectrumCombiner (std::vector< pappso_double > bins, int decimalPlaces=-1, QObject *parent_p=nullptr)
	MassSpectrumCombiner (MassSpectrumCombinerCstSPtr other, QObject *parent_p=nullptr)
	MassSpectrumCombiner (const MassSpectrumCombiner &other, QObject *parent_p=nullptr)
	MassSpectrumCombiner (const MassSpectrumCombiner &&other, QObject *parent_p=nullptr)
virtual	~MassSpectrumCombiner ()
	Destruct the instance.
Q_INVOKABLE void	setBins (std::vector< pappso_double > bins)
Q_INVOKABLE const std::vector< pappso_double > &	getBins () const
Q_INVOKABLE std::size_t	binCount () const
Q_INVOKABLE QString	binsAsString () const
Public Member Functions inherited from pappso::MassDataCombinerInterface
	MassDataCombinerInterface (int decimal_places=-1)
virtual	~MassDataCombinerInterface ()
void	setDecimalPlaces (int value)
int	getDecimalPlaces () const
virtual MapTrace &	combine (MapTrace &map_trace, Iterator begin, Iterator end)
virtual MapTrace &	combine (MapTrace &map_trace, const Trace &trace) const =0
virtual MapTrace &	combine (MapTrace &map_trace_out, const MapTrace &map_trace_in) const =0

Static Public Member Functions
static void	registerJsConstructor (QJSEngine *engine)

Protected Member Functions
std::vector< pappso_double >::iterator	findBin (pappso_double mz)
	Find the bin that will contain mz.

Protected Attributes
std::vector< pappso_double >	m_bins
Protected Attributes inherited from pappso::MassDataCombinerInterface
int	m_decimalPlaces = -1
	Number of decimals to use for the keys (x values)

Properties
int	size

Additional Inherited Members
Public Types inherited from pappso::MassDataCombinerInterface
using	Iterator = std::vector< const Trace * >::const_iterator

Detailed Description

Definition at line 25 of file massspectrumcombiner.h.

Constructor & Destructor Documentation

MassSpectrumCombiner() [1/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner

(

QObject *

parent_p = nullptr

)

Construct an uninitialized instance.

Definition at line 19 of file massspectrumcombiner.cpp.

                                                           : QObject(parent_p)
{
}

MassSpectrumCombiner() [2/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner	(	int	decimal_places,
		QObject *	parent_p = nullptr
	)

Definition at line 23 of file massspectrumcombiner.cpp.

  : QObject(parent_p), MassDataCombinerInterface(decimal_places)
{
}

MassSpectrumCombiner() [3/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner	(	std::vector< pappso_double >	bins,
		int	decimalPlaces = -1,
		QObject *	parent_p = nullptr
	)

Definition at line 29 of file massspectrumcombiner.cpp.

  : QObject(parent_p), MassDataCombinerInterface(decimalPlaces)
{
  m_bins.assign(bins.begin(), bins.end());
}

References m_bins.

MassSpectrumCombiner() [4/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner	(	MassSpectrumCombinerCstSPtr	other,
		QObject *	parent_p = nullptr
	)

Definition at line 57 of file massspectrumcombiner.cpp.

  : QObject(parent_p), MassDataCombinerInterface(other->m_decimalPlaces)
{
  m_bins.assign(other->m_bins.begin(), other->m_bins.end());
}

References m_bins.

MassSpectrumCombiner() [5/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner	(	const MassSpectrumCombiner &	other,
		QObject *	parent_p = nullptr
	)

Definition at line 37 of file massspectrumcombiner.cpp.

  : QObject(parent_p), MassDataCombinerInterface(other.m_decimalPlaces)
{
  m_bins.assign(other.m_bins.begin(), other.m_bins.end());
 
  // QString debug_string = QString(
  //"Number of bins: %1\n"
  //"First bins: %2 %3 %4 -- Last bins: %5 %6 %7\n")
  //.arg(m_bins.size())
  //.arg(m_bins[0], 0, 'f', 6)
  //.arg(m_bins[1], 0, 'f', 6)
  //.arg(m_bins[2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 3], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 1], 0, 'f', 6);
 
  // qDebug().noquote() << debug_string;
}

References m_bins.

MassSpectrumCombiner() [6/6]

pappso::MassSpectrumCombiner::MassSpectrumCombiner	(	const MassSpectrumCombiner &&	other,
		QObject *	parent_p = nullptr
	)

~MassSpectrumCombiner()

pappso::MassSpectrumCombiner::~MassSpectrumCombiner ( )

virtual

Destruct the instance.

Definition at line 65 of file massspectrumcombiner.cpp.

{
  m_bins.clear();
}

References m_bins.

Member Function Documentation

binCount()

std::size_t pappso::MassSpectrumCombiner::binCount

(

)

const

Definition at line 98 of file massspectrumcombiner.cpp.

{
  return m_bins.size();
}

References m_bins.

binCountChanged

void pappso::MassSpectrumCombiner::binCountChanged ( )

signal

Referenced by setBins().

binsAsString()

QString pappso::MassSpectrumCombiner::binsAsString

(

)

const

Definition at line 113 of file massspectrumcombiner.cpp.

{
  QString text;
 
  for(auto &bin : m_bins)
    text += QString("%1\n").arg(bin, 0, 'f', 6);
 
  text += "\n";
 
  return text;
}

References m_bins.

findBin()

std::vector< pappso_double >::iterator pappso::MassSpectrumCombiner::findBin ( pappso_double  mz )

protected

Find the bin that will contain mz.

Definition at line 105 of file massspectrumcombiner.cpp.

{
  return std::find_if(m_bins.begin(), m_bins.end(), [mz](pappso_double bin) {
    return (mz <= bin);
  });
}

References m_bins.

getBins()

const std::vector< pappso_double > & pappso::MassSpectrumCombiner::getBins

(

)

const

Definition at line 92 of file massspectrumcombiner.cpp.

{
  return m_bins;
}

References m_bins.

registerJsConstructor()

void pappso::MassSpectrumCombiner::registerJsConstructor ( QJSEngine *  engine )

static

Definition at line 126 of file massspectrumcombiner.cpp.

{
  // qDebug() << "registerJsConstructor for MassSpectrumCombiner to QJSEngine.";
 
  if(engine == nullptr)
    {
      qFatal() << "Cannot register class: engine is null";
    }
 
  // Register the meta object as a constructor
  QJSValue jsMetaObject =
    engine->newQMetaObject(&MassSpectrumCombiner::staticMetaObject);
  engine->globalObject().setProperty("MassSpectrumCombiner", jsMetaObject);
}

setBins()

void pappso::MassSpectrumCombiner::setBins

(

std::vector< pappso_double >

bins

)

Definition at line 71 of file massspectrumcombiner.cpp.

{
  m_bins.assign(bins.begin(), bins.end());
 
  // QString debug_string = QString(
  //"Number of bins: %1\n"
  //"First bins: %2 %3 %4 -- Last bins: %5 %6 %7\n")
  //.arg(m_bins.size())
  //.arg(m_bins[0], 0, 'f', 6)
  //.arg(m_bins[1], 0, 'f', 6)
  //.arg(m_bins[2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 3], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 2], 0, 'f', 6)
  //.arg(m_bins[m_bins.size() - 1], 0, 'f', 6);
 
  // qDebug().noquote() << debug_string;
 
  emit binCountChanged();
}

References binCountChanged(), and m_bins.

Member Data Documentation

m_bins

std::vector<pappso_double> pappso::MassSpectrumCombiner::m_bins

protected

Definition at line 60 of file massspectrumcombiner.h.

Referenced by MassSpectrumCombiner(), MassSpectrumCombiner(), MassSpectrumCombiner(), ~MassSpectrumCombiner(), binCount(), binsAsString(), pappso::MassSpectrumMinusCombiner::combine(), pappso::MassSpectrumPlusCombiner::combine(), findBin(), getBins(), pappso::MassSpectrumMinusCombiner::operator=(), pappso::MassSpectrumPlusCombiner::operator=(), and setBins().

Property Documentation

size

int pappso::MassSpectrumCombiner::size

read

Definition at line 30 of file massspectrumcombiner.h.

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The documentation for this class was generated from the following files:

• pappsomspp/core/processing/combiners/massspectrumcombiner.h
• pappsomspp/core/processing/combiners/massspectrumcombiner.cpp