tandemng (0.3.17-1~trixie1) trixie; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 11 May 2026 13:13:23 +0200

tandemng (0.3.16-1~trixie1) trixie; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 20 Mar 2026 16:23:38 +0100

tandemng (0.3.15-1~trixie2) trixie; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 05 Dec 2025 11:01:08 +0100

tandemng (0.3.15-1~trixie1) trixie; urgency=medium

  * new PAPPSOms++ library, brings mzCBOR support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 02 Dec 2025 10:38:50 +0100

tandemng (0.3.14-4~trixie1) trixie; urgency=medium

  * Compile with libpappso 0.11.2

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 08 Oct 2025 10:16:48 +0200

tandemng (0.3.14-3~trixie1) trixie; urgency=medium

  * Compile with libpappso 0.11.1

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 22 Sep 2025 16:10:33 +0200

tandemng (0.3.14-2~bookworm1) bookworm; urgency=medium

  * Compile with libpappso 0.9.49

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 04 Sep 2025 10:49:25 +0200

tandemng (0.3.14-1~bookworm1) bookworm; urgency=medium

  * Instantiate QCoreApplication to use QSqlDatabase
  * Protect spectrum load process : catch exception and report
    loading errors

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 04 Sep 2025 10:19:17 +0200

tandemng (0.3.13-4~bookworm1) bookworm; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 26 Jun 2025 11:25:03 +0200

tandemng (0.3.13-3~bookworm1) bookworm; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 07 May 2025 13:48:14 +0200

tandemng (0.3.13-2~bookworm1) bookworm; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 24 Jan 2025 10:13:20 +0100

tandemng (0.3.13-1~bookworm1) bookworm; urgency=medium

  * new PAPPSOms++ library
  * error meassage in standard error on read parameter failure

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 25 Nov 2024 14:50:48 +0100

tandemng (0.3.12-1~bookworm2) bookworm; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 18 Oct 2024 10:53:22 +0200

tandemng (0.3.12-1~bookworm1) bookworm; urgency=medium

  * Refactoring : sharing code between tandem flavors
  * cpp file for msequence object and new member functions

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 20 Aug 2024 13:44:25 +0200

tandemng (0.3.11-1~bookworm1) bookworm; urgency=medium

  * Refactoring : sharing code between tandem flavors
  * New tandem input parser
  * Better error messages
  * Exception on preset reading failure
  * Exception on output writing failure

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 16 Jul 2024 13:09:33 +0200

tandemng (0.3.10-1~bookworm1) bookworm; urgency=medium

  * Bump version for Ubuntu launchpad

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 04 Jun 2024 14:32:01 +0200

tandemng (0.3.9-1~bookworm1) bookworm; urgency=medium

  * All msdata parsers replaced by the PAPPSOms++ library reader

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 28 May 2024 16:09:07 +0200

tandemng (0.3.8-1~bookworm1) bookworm; urgency=medium

  * Cleaning old MS data format detection

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 21 May 2024 10:16:48 +0200

tandemng (0.3.7-1~bookworm1) bookworm; urgency=medium

  * Write point mutations to mzIdentML result file as a PSI MOD removal and insertion of AA

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 06 May 2024 14:15:55 +0200

tandemng (0.3.6-1~bookworm1) bookworm; urgency=medium

  * Write all performance parameters in xml and mzid reports
  * Keep trace of the tandemng version in output

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 03 May 2024 09:49:55 +0200

tandemng (0.3.5-1~bookworm1) bookworm; urgency=medium

  * parse protein accession in mzid report
  * remove unneeded expat files
  * share code for mzid and xml report
  * share code for pappsoms++ spectrum load

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 30 Apr 2024 13:06:51 +0200

tandemng (0.3.4-1~bookworm1) bookworm; urgency=medium

  * fix PSI-MS OBO term to describe mzML conversion

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 25 Apr 2024 14:23:53 +0200

tandemng (0.3.3-1~bookworm1) bookworm; urgency=medium

  * Embed Piledriver (2015.04.01.1) in the source tree

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 29 Mar 2024 13:20:04 +0100

tandemng (0.3.2-1~bookworm1) bookworm; urgency=medium

  * Writes the sample name given by PAPPSOms++ in mzIdentML output file

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 15 Mar 2024 16:50:28 +0100

tandemng (0.3.1-1~bookworm1) bookworm; urgency=medium

  * Conflicts with old tandemng-mass package
  * Install binary files

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 01 Mar 2024 18:52:58 +0100

tandemng (0.3.0-1~bookworm1) bookworm; urgency=medium

  [ Olivier Langella ]
  * Include tandem 2015 in source tree, compile in tandemng2015 binary file
  * Better mzidentML generation through new PAPPSOms++ API
  [ Filippo Rusconi ]
  * Rename tandemng-mass debian package to tandemng
  * README notice update to highlight that tandemng is a fork

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 01 Mar 2024 11:20:11 +0100

tandemng (0.2.0-1~bookworm1) bookworm; urgency=medium

  * write tandem search parameters in MzIdentML userParam element
  * define regexp to recognize decoy proteins

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 02 Feb 2024 11:23:34 +0100

tandemng (0.1.0-1~bookworm1) bookworm; urgency=medium

  * integration of PAPPSOms++ library
  * reads all MS data files available in PAPPSOms++ library
  * new tandem XML writer for identification reports
  * new MzIdentML exports using PSI-MOD ontology

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 30 Jan 2024 15:25:07 +0100

tandemng (1:201702011-1~bookworm1) bookworm; urgency=medium

  * first bookworm package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 Dec 2023 16:29:48 +0100

tandem-mass (1:201702011-1) unstable; urgency=low

  * Exactly same package as the previous one that could not be uploaded
    because the package version number was not greater than the former NMU one
    (of version 1:20170201-0.1).

 -- Filippo Rusconi <lopippo@debian.org>  Sun, 18 Nov 2018 09:00:11 +0100

tandem-mass (1:20170201-2) unstable; urgency=low

  * Fix FTCBFS: Let dh_auto_build pass cross tools to make.
    Helmut Grohne <helmut@subdivi.de>  Sun, 14 Oct 2018 21:26:59 +0200
    (Closes: #911021).

  * Update Vcs fields to match salsa locations.

  * Update StandardsVersion to 4.2.1.

 -- Filippo Rusconi <lopippo@debian.org>  Sat, 17 Nov 2018 20:09:58 +0100

tandem-mass (1:20170201.1-1) unstable; urgency=low

  * debian/control: add secure vcs-git url.
                    StandardsVersion : 4.0.0 (no changes)
                    debian/compat set to 9
                    removed the dbg binary package stanza:
                    thus, set debhelper (>= 9.20151219)

  * debian/patches: add patch to fix pointer vs integer comparison (gcc
    7-spotted).

 	* successful test of the patch by Olivier Langella
  	<olivier.langella@u-psud.fr>.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 22 Aug 2017 15:36:59 +0200

tandem-mass (1:20170201-0.1) unstable; urgency=medium

  * Non-maintainer upload.
  * import of the lates X\!Tandem (ALANINE (2017.02.01)) sources from
    ftp://ftp.thegpm.org/projects/tandem/source/tandem-linux-17-02-01-
    4.zip

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 17 Aug 2017 10:51:38 +0200

tandem-mass (1:20151215-5) unreleased; urgency=low

  * debian/control: add vcs-git secure url.

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 01 Sep 2016 11:19:14 +0200

tandem-mass (1:20151215-4) unstable; urgency=medium

  * debian/control: fix the URL that describes the format (thanks to Daniele
    Forsi <dforsi@gmail.com>) Closes: #819432.

  * fix various packaging issues as detected by lintian.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 29 Mar 2016 09:31:24 +0200

tandem-mass (1:20151215-3) unstable; urgency=medium

  * debian/copyright: add MIT licence for files expat* files.

 -- Filippo Rusconi <lopippo@debian.org>  Sun, 20 Mar 2016 10:58:33 +0100

tandem-mass (1:20151215-2) unstable; urgency=medium

  * debian/copyright: add Apache licence for files MSNumpress.{cpp,hpp}
  * debian/control: Bump up StandardsVersion to 3.9.7, no changes required.

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 18 Mar 2016 19:01:23 +0100

tandem-mass (1:20151215-1) unstable; urgency=medium

  * New upstream version (VENGEANCE 2015.12.15);
  * Initial packaging by Olivier Langella <Olivier.Langella@moulon.inra.fr>;
  * Added canonical support for debug symbols in tandem-mass-dbg.
  * Upload by Filippo Rusconi <lopippo@debian.org>.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 07 Mar 2016 21:34:08 +0100

tandem-mass (1:20150401-1) unstable; urgency=medium

  * New upstream release.
  * d/copyright: adapt format to specification
  * d/control:  Standards-Version: 3.9.6; no changes required.
  * d/control: s/git/cgit/ in Vcs-Browser.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 03 Nov 2015 18:42:12 +0100

tandem-mass (1:2013.09.01-2) unstable; urgency=medium

  * mv upstream upstream/metadata;

  * Bump up StandardsVersion to 3.9.5.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 18 Aug 2014 10:47:26 +0200

tandem-mass (1:2013.09.01-1) unstable; urgency=low

  * Packaging of X!Tandem (SLEDGEHAMMER 2013.09.01, from
    http://www.thegpm.org/tandem/) for Debian GNU/Linux
    (Olivier Langella <Olivier.Langella@moulon.inra.fr>, with the
    great help of Filippo Rusconi <lopippo@debian.org>);

  * Upload by Filippo Rusconi <lopippo@debian.org>.

 -- The Debichem Group <debichem-devel@lists.alioth.debian.org>  Fri, 22 Nov 2013 10:21:32 +0200

tandem-mass (1:2013.06.15-1) unstable; urgency=low

  * quilt dependencies removed from rules. quilt is now used the modern
    way as decribed in http://pkg-perl.alioth.debian.org/howto/quilt.html

  * Packaging of X!Tandem (JACKHAMMER 2013.06.15, from
    http://www.thegpm.org/TANDEM/) for Debian GNU/Linux
    (Olivier Langella <Olivier.Langella@moulon.inra.fr>, with the
    great help of Filippo Rusconi <lopippo@debian.org>);

  * Upload by Filippo Rusconi <lopippo@debian.org>;

 -- The Debichem Group <debichem-devel@lists.alioth.debian.org>  Thu, 29 Aug 2013 12:21:32 +0200

tandem-mass (1:2013.02.01.1-1) unstable; urgency=low

  * Packaging of X!Tandem (CYCLONE 2013.02.01.1, from
    http://www.thegpm.org/TANDEM/) for Debian GNU/Linux
    (Olivier Langella <olivier.langella@laposte.net>, with the
    great help of Filippo Rusconi <lopippo@debian.org>);
  * Added and tested debian/watch file (Filippo Rusconi);
  * Added debian/upstream file (Olivier Langella);

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 07 Jun 2013 19:31:15 +0200

tandem-mass (20121001-2) unstable; urgency=low

  * Fix the target build-stamp by adding the $(QUILT_STAMPFN)
    dependency. This missing dependency seemingly caused problems in
    Ubuntu (as reported by Tim Gardner <tim.gardner@canonical.com>;
    Closes: #695553). Thanks Tim.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 16 Jan 2013 21:26:08 +0100

tandem-mass (20121001-1) unstable; urgency=low

  * Initial packaging of X!Tandem (CYCLONE 12-10-01-1, from
    http://www.thegpm.org/TANDEM/) for Debian GNU/Linux (in collaboration
    with Olivier Langella <olivier.langella@laposte.net>). (Closes: #693800).

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 14 Nov 2012 14:46:19 +0100
