cd test/java/tests/cmd/b1922_293T_proteinID_02A_QE3_122212/baseAlexandre

test on c66523f8490d668550d56eed1df66937d0f0e541 (fixed model bug)

java.util.logging.ConsoleHandler.level     = WARNING



java -server -Xmx6g -jar ~/../../mnt/c/Users/Alexandre/Desktop/git_repos/SpecOMS/SpecOMS.jar -c
libGL error: No matching fbConfigs or visuals found
libGL error: failed to load driver: swrast
Prism-ES2 Error : GL_VERSION (major.minor) = 1.4
Reading configuration
Parsing proteins...
86934 database proteins added...
Adding contaminants...
116 contaminants proteins added...
Nombre de peptides:1120832
Constructing theoretical spectra...
1120832 theoretical spectra added.
43137 experimental spectra added.
Clustering 1163969 spectra...
Building SpecTrees...
c'est extractor
Running SpecXtract and SpecShift...
[          ]

                                                                                                                                                                                                                                                                                                                     Uptime: 00:21:20


test on c59abd8a2955d71d997aa0b4d762a0fe9fbca546
langella@piccolo:~/developpement/git/deepprot/test/java/tests/cmd/b1922_293T_proteinID_02A_QE3_122212/baseAlexandre_withooutloggers$ time java -server -Xmx8g -jar /home/langella/developpement/git/deepprot/cbuild/bin/SpecOMS.jar -c
Reading configuration
Parsing proteins...
86934 database proteins added...
Adding contaminants...
116 contaminants proteins added...
Nombre de peptides:1120832
Constructing theoretical spectra...
1120832 theoretical spectra added.
43137 experimental spectra added.
Clustering 1163969 spectra...
Building SpecTrees...
c'est extractor
Running SpecXtract and SpecShift...
[^C        ]
real	37m16,151s
user	38m45,719s
sys	0m2,060s

no start, memory used : 4 Gb
=> check spectrum treatment if no filter was specified