
test on 419bda3385505c6db72f4f97f36e9870ae9e6798

langella@themis:~/developpement/git/deepprot/test/java/tests/cmd/PXD004732_SENSIBLE_T7S9_MIN-500$ time java -server -Xmx8g -jar /home/langella/developpement/git/deepprot/cbuild/bin/SpecOMS.jar -c
Reading configuration
Parsing proteins...
48359 database proteins added...
Adding contaminants...
128 contaminants proteins added...
Nombre de peptides:2547027
Constructing theoretical spectra...
2547027 theoretical spectra added.
55458 experimental spectra added.
java.io.FileNotFoundException: /gorgone/pappso/versions_logiciels_pappso/deepprot/donnees/PXD004732/v20200318/PXD004732_SENSIBLE_T7S9_MIN-500_protein_reference_table.txt (Aucun fichier ou dossier de ce type)
Clustering spectra...
Building SpecTrees...
c'est extractor
Exception in Application start method
Exception in thread "main" java.lang.RuntimeException: Exception in Application start method
	at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:900)
	at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:195)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.ArrayIndexOutOfBoundsException: Index 2547428 out of bounds for length 2547428
	at algorithms.fptree.FPTree.first(FPTree.java:331)
	at algorithms.fptree.builder.FPTBuilder.manageSideAccess(FPTBuilder.java:164)
	at algorithms.fptree.builder.FPTBuilder.build(FPTBuilder.java:140)
	at algorithms.fptree.FPTree.buildTree(FPTree.java:149)
	at mvc.Model.<init>(Model.java:168)
	at mvc.Main.start(Main.java:70)
	at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$9(LauncherImpl.java:846)
	at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$12(PlatformImpl.java:455)
	at com.sun.javafx.application.PlatformImpl.lambda$runLater$10(PlatformImpl.java:428)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at com.sun.javafx.application.PlatformImpl.lambda$runLater$11(PlatformImpl.java:427)
	at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:96)
	at com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
	at com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$11(GtkApplication.java:277)
	... 1 more

real	1m47,834s
user	3m1,949s
sys	0m6,722s
