cd cbuild

cmake .. -DCMAKE_BUILD_TYPE=Debug

make

execute on 344f73e403dce6d741f1aca0b9be5700084615ca

./src/deepprot -p ../test/cpp/cmd/PXD004732_59678/PXD004732_params.csv -m ../test/data/01650b_BG3-TUM_first_pool_65_01_01-DDA-1h-R2-59678.mgf /media/langella/pappso/deepprot/donnees/PXD004732/Araport11_genes.201606.pep.fasta /media/langella/pappso/deepprot/donnees/PXD004732/crapPeptidesRef_Pool65.fasta -o ../test/cpp/cmd/PXD004732_59678/results.tsv

/home/langella/developpement/git/deepprot/src/core/msspectrumreader.cpp@177 MsSpectrumReader::setQualifiedMassSpectrum(): "index=0"   "index=0\n11005 11006 11007 11008 11009 12006 12007 12008 12009 12010 12908 12909 12910 12911 12912 13006 13007 13008 13009 13010 14709 14710 14711 14712 14713 16504 16505 16506 16507 16508 17509 17510 17511 17512 17513 17906 17907 17908 17909 17910 18312 18313 18314 18315 18316 18910 18911 18912 18913 18914 19506 19507 19508 19509 19510 19606 19607 19608 19609 19610 21112 21113 21114 21115 21116 21511 21512 21513 21514 21515 21711 21712 21713 21714 21715 22510 22511 22512 22513 22514 22711 22712 22713 22714 22715 22716 22717 22718 22719 23412 23413 23414 23415 23416 23911 23912 23913 23914 23915 24108 24109 24110 24111 24112 24309 24310 24311 24312 24313 24409 24410 24411 24412 24413 24814 24815 24816 24817 24818 26017 26018 26019 26020 26021 26113 26114 26115 26116 26117 31121 31122 31123 31124 31125 34416 34417 34418 34419 34420 34816 34817 34818 34819 34820 34916 34917 34918 34919 34920 35012 35013 35014 35015 35016 38715 38716 38717 38718 38719 42718 42719 42720 42721 42722 43517 43518 43519 43520 43521 45120 45121 45122 45123 45124 45220 45221 45222 45223 45224 45317 45318 45319 45320 45321 49420 49421 49422 49423 49424 51820 51821 51822 51823 51824 53424 53425 53426 53427 53428 53622 53623 53624 53625 53626 54132 54133 54134 54135 54136 55421 55422 55423 55424 55425 55725 55726 55727 55728 55729 65440 65441 65442 65443 65444 71439 71440 71441 71442 71443 72544 72545 72546 72547 72548 73539 73540 73541 73542 73543 74334 74335 74336 74337 74338 78137 78138 78139 78140 78141 79892 79893 79894 79895 79896 79939 79940 79941 79942 79943 79984 79985 79986 79987 79988 81141 81142 81143 81144 81145 84541 84542 84543 84544 84545 84642 84643 84644 84645 84646 110860 110861 110862 110863 110864 110960 110961 110962 110963 110964 119361 119362 119363 119364 119365 135569 135570 135571 135572 135573 \n"

this is the same spectrum as test/java/tests/cmd/PXD004732_59678/readme.txt

same peptide found in results
