/**
 * \file output/masschroqprm.h
 * \date 10/6/2017
 * \author Olivier Langella
 * \brief MassChroqPRM writer
 */

/*******************************************************************************
 * Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
 *
 * This file is part of i2MassChroQ.
 *
 *     i2MassChroQ is free software: you can redistribute it and/or modify
 *     it under the terms of the GNU General Public License as published by
 *     the Free Software Foundation, either version 3 of the License, or
 *     (at your option) any later version.
 *
 *     i2MassChroQ is distributed in the hope that it will be useful,
 *     but WITHOUT ANY WARRANTY; without even the implied warranty of
 *     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *     GNU General Public License for more details.
 *
 *     You should have received a copy of the GNU General Public License
 *     along with i2MassChroQ.  If not, see <http://www.gnu.org/licenses/>.
 *
 * Contributors:
 *     Olivier Langella <olivier.langella@u-psud.fr> - initial API and
 *implementation
 ******************************************************************************/

#pragma once

#include <QXmlStreamWriter>
#include <QFile>
#include <QString>
#include "../core/project.h"
#include "../grouping/groupinggroup.h"

class MassChroqPrm
{
  public:
  MassChroqPrm(const QString &out_filename);
  ~MassChroqPrm();

  void write(ProjectSp sp_project);
  void close();

  private:
  void writePeptides();

  private:
  QFile *_output_file;
  QXmlStreamWriter *_output_stream;
  ProjectSp _sp_project;
  IdentificationGroup *_p_identification_group;
};
