<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
 <class>McqrScRunView</class>
 <widget class="QWidget" name="McqrScRunView">
  <property name="geometry">
   <rect>
    <x>0</x>
    <y>0</y>
    <width>808</width>
    <height>965</height>
   </rect>
  </property>
  <property name="windowTitle">
   <string>MCQR Spectral Count</string>
  </property>
  <property name="windowIcon">
   <iconset resource="../../../i2masschroq.qrc">
    <normaloff>:/mcq_icon/resources/masschroq.svg</normaloff>:/mcq_icon/resources/masschroq.svg</iconset>
  </property>
  <property name="styleSheet">
   <string notr="true">QToolBox{ icon-size: 20px; 		        
		border-radius: 5px;
}     
QToolBox::tab {
         background:qlineargradient(spread:pad, x1:0.171, y1:0.0562727, x2:0.33, y2:0.738455, stop:0 rgba(196, 216, 226, 255), stop:1 rgba(247, 247, 247, 255));
         border-radius: 5px;
     }
     QToolBox::tab:selected { /* italicize selected tabs */
         font: bold;
     }</string>
  </property>
  <layout class="QVBoxLayout" name="verticalLayout">
   <item>
    <widget class="QMenuBar" name="menubar"/>
   </item>
   <item>
    <widget class="QWidget" name="centralwidget" native="true">
     <property name="sizePolicy">
      <sizepolicy hsizetype="Preferred" vsizetype="Expanding">
       <horstretch>0</horstretch>
       <verstretch>0</verstretch>
      </sizepolicy>
     </property>
     <layout class="QHBoxLayout" name="horizontalLayout">
      <item>
       <widget class="QSplitter" name="splitter">
        <property name="styleSheet">
         <string notr="true">color: rgb(0, 0, 0);</string>
        </property>
        <property name="orientation">
         <enum>Qt::Horizontal</enum>
        </property>
        <widget class="QWidget" name="widget" native="true">
         <property name="sizePolicy">
          <sizepolicy hsizetype="Minimum" vsizetype="Expanding">
           <horstretch>0</horstretch>
           <verstretch>0</verstretch>
          </sizepolicy>
         </property>
         <property name="styleSheet">
          <string notr="true">QToolBox{ icon-size: 20px; 		        
		border-radius: 5px;
}     
QToolBox::tab {
         background:qlineargradient(spread:pad, x1:0.171, y1:0.0562727, x2:0.33, y2:0.738455, stop:0 rgba(196, 216, 226, 255), stop:1 rgba(247, 247, 247, 255));
         border-radius: 5px;
     }
     QToolBox::tab:selected { /* italicize selected tabs */
         font: bold;
     }</string>
         </property>
         <layout class="QVBoxLayout" name="verticalLayout_2">
          <item>
           <widget class="QToolBox" name="toolBox">
            <property name="sizePolicy">
             <sizepolicy hsizetype="Minimum" vsizetype="MinimumExpanding">
              <horstretch>0</horstretch>
              <verstretch>0</verstretch>
             </sizepolicy>
            </property>
            <property name="currentIndex">
             <number>0</number>
            </property>
            <widget class="QWidget" name="a1setwd">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>Spectral Count working directory</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_14">
              <item>
               <widget class="QGroupBox" name="a1_groupBox">
                <property name="title">
                 <string>Select protein set</string>
                </property>
                <layout class="QVBoxLayout" name="verticalLayout_5">
                 <item>
                  <widget class="QRadioButton" name="a1_all_protein_radioButton">
                   <property name="text">
                    <string>all grouped proteins</string>
                   </property>
                   <attribute name="buttonGroup">
                    <string notr="true">buttonGroup</string>
                   </attribute>
                  </widget>
                 </item>
                 <item>
                  <widget class="QRadioButton" name="a1_all_protein_subgroups_radioButton">
                   <property name="text">
                    <string>all protein subgroups</string>
                   </property>
                   <attribute name="buttonGroup">
                    <string notr="true">buttonGroup</string>
                   </attribute>
                  </widget>
                 </item>
                </layout>
               </widget>
              </item>
              <item>
               <widget class="QLabel" name="wdLabel">
                <property name="text">
                 <string>not selected</string>
                </property>
                <property name="wordWrap">
                 <bool>true</bool>
                </property>
                <property name="textInteractionFlags">
                 <set>Qt::LinksAccessibleByMouse|Qt::TextSelectableByMouse</set>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="selectDirectoryButton">
                <property name="text">
                 <string>set MCQR working directory</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="pushButton">
                <property name="text">
                 <string>get spectral count table as ODS file</string>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a2loadpage">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>800</width>
               <height>495</height>
              </rect>
             </property>
             <property name="sizePolicy">
              <sizepolicy hsizetype="MinimumExpanding" vsizetype="Preferred">
               <horstretch>0</horstretch>
               <verstretch>0</verstretch>
              </sizepolicy>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/mit/jamicons/upload.svg</normaloff>:/icons/resources/icons/mit/jamicons/upload.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>Load</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_4">
              <item>
               <widget class="QPushButton" name="getMetadataTemplateButton">
                <property name="text">
                 <string>Fill in the MCQR metadata template</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="uploadMetadataFileButton">
                <property name="text">
                 <string>Load metadata template file</string>
                </property>
               </widget>
              </item>
              <item>
               <layout class="QGridLayout" name="gridLayout">
                <item row="0" column="0">
                 <widget class="QLabel" name="label_2">
                  <property name="text">
                   <string>color by</string>
                  </property>
                 </widget>
                </item>
                <item row="1" column="1">
                 <widget class="McqrMetadataFactorListView" name="factorListView">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="MinimumExpanding" vsizetype="Minimum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                 </widget>
                </item>
                <item row="1" column="0">
                 <widget class="McqrMetadataFactorListView" name="colorListView">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="MinimumExpanding" vsizetype="Minimum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                 </widget>
                </item>
                <item row="1" column="2">
                 <widget class="McqrMetadataFactorListView" name="labelListView">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="MinimumExpanding" vsizetype="Minimum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                 </widget>
                </item>
                <item row="0" column="1">
                 <widget class="QLabel" name="label_3">
                  <property name="text">
                   <string>factors</string>
                  </property>
                 </widget>
                </item>
                <item row="0" column="2">
                 <widget class="QLabel" name="label_4">
                  <property name="text">
                   <string>label</string>
                  </property>
                 </widget>
                </item>
               </layout>
              </item>
              <item>
               <widget class="QPushButton" name="a2a2_pca_pushButton">
                <property name="text">
                 <string>View PCA</string>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a3a1removeMsrun">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/filter.svg</normaloff>:/icons/resources/icons/filter.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>MCQR remove MS run</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_15">
              <item>
               <widget class="McqrMetadataMsrunListView" name="msrunListView">
                <property name="sizePolicy">
                 <sizepolicy hsizetype="Expanding" vsizetype="Maximum">
                  <horstretch>0</horstretch>
                  <verstretch>0</verstretch>
                 </sizepolicy>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="a3a1pushButton">
                <property name="text">
                 <string>remove MS run</string>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a4proteinFilter">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/filter.svg</normaloff>:/icons/resources/icons/filter.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>MCQR protein filter</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_3">
              <item>
               <widget class="QGroupBox" name="groupBox">
                <property name="title">
                 <string>Remove proteins (too few sc or no variation)</string>
                </property>
                <layout class="QFormLayout" name="formLayout_9">
                 <item row="0" column="1">
                  <widget class="QSpinBox" name="a4_spectra_cutoff_spin">
                   <property name="maximum">
                    <number>1000</number>
                   </property>
                   <property name="singleStep">
                    <number>1</number>
                   </property>
                   <property name="value">
                    <number>3</number>
                   </property>
                  </widget>
                 </item>
                 <item row="0" column="0">
                  <widget class="QLabel" name="label_12">
                   <property name="text">
                    <string>Number of spectra cutoff</string>
                   </property>
                  </widget>
                 </item>
                 <item row="1" column="0">
                  <widget class="QLabel" name="label_14">
                   <property name="text">
                    <string>fold-change cutoff</string>
                   </property>
                  </widget>
                 </item>
                 <item row="1" column="1">
                  <widget class="QDoubleSpinBox" name="a4_fc_doubleSpinBox">
                   <property name="decimals">
                    <number>1</number>
                   </property>
                   <property name="singleStep">
                    <double>0.100000000000000</double>
                   </property>
                   <property name="value">
                    <double>1.500000000000000</double>
                   </property>
                  </widget>
                 </item>
                </layout>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="a4proteinFilterButton">
                <property name="text">
                 <string>protein filter</string>
                </property>
                <property name="icon">
                 <iconset resource="../../../i2masschroq.qrc">
                  <normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</iconset>
                </property>
                <property name="iconSize">
                 <size>
                  <width>20</width>
                  <height>20</height>
                 </size>
                </property>
               </widget>
              </item>
              <item>
               <spacer name="verticalSpacer">
                <property name="orientation">
                 <enum>Qt::Vertical</enum>
                </property>
                <property name="sizeHint" stdset="0">
                 <size>
                  <width>20</width>
                  <height>40</height>
                 </size>
                </property>
               </spacer>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a5heatmapPage">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/heatmap.svg</normaloff>:/icons/resources/icons/heatmap.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>MCQR protein abundance heatmap</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_9">
              <item>
               <widget class="QLabel" name="label_54">
                <property name="sizePolicy">
                 <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                  <horstretch>0</horstretch>
                  <verstretch>0</verstretch>
                 </sizepolicy>
                </property>
                <property name="font">
                 <font>
                  <bold>true</bold>
                 </font>
                </property>
                <property name="text">
                 <string>Heatmap parameters</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QLabel" name="label_53">
                <property name="sizePolicy">
                 <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                  <horstretch>0</horstretch>
                  <verstretch>0</verstretch>
                 </sizepolicy>
                </property>
                <property name="text">
                 <string>Select the factors used above in the factor list</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QLabel" name="label_55">
                <property name="sizePolicy">
                 <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                  <horstretch>0</horstretch>
                  <verstretch>0</verstretch>
                 </sizepolicy>
                </property>
                <property name="text">
                 <string>Select the factors to color above (Must be in the first list)</string>
                </property>
               </widget>
              </item>
              <item>
               <layout class="QFormLayout" name="formLayout_4">
                <property name="sizeConstraint">
                 <enum>QLayout::SetDefaultConstraint</enum>
                </property>
                <property name="fieldGrowthPolicy">
                 <enum>QFormLayout::AllNonFixedFieldsGrow</enum>
                </property>
                <item row="1" column="0">
                 <widget class="QLabel" name="label_56">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                  <property name="text">
                   <string>DIstance computing method</string>
                  </property>
                 </widget>
                </item>
                <item row="1" column="1">
                 <widget class="QComboBox" name="distfun_combobox">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                  <item>
                   <property name="text">
                    <string>1-pearson</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>euclidean</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>maximum</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>manhattan</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>canberra</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>binary</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>minkowski</string>
                   </property>
                  </item>
                 </widget>
                </item>
                <item row="2" column="0">
                 <widget class="QLabel" name="label_57">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                  <property name="text">
                   <string>Agglomeration method </string>
                  </property>
                 </widget>
                </item>
                <item row="2" column="1">
                 <widget class="QComboBox" name="agg_method_combobox">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                  <item>
                   <property name="text">
                    <string>ave</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>ward.D</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>single</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>complete</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>mcquitty</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>median</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>centroid</string>
                   </property>
                  </item>
                 </widget>
                </item>
               </layout>
              </item>
              <item>
               <widget class="Line" name="line_18">
                <property name="orientation">
                 <enum>Qt::Horizontal</enum>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="a5heatmap_btn">
                <property name="text">
                 <string>Plot heatmap abundance</string>
                </property>
                <property name="icon">
                 <iconset resource="../../../i2masschroq.qrc">
                  <normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</iconset>
                </property>
                <property name="iconSize">
                 <size>
                  <width>20</width>
                  <height>20</height>
                 </size>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a6clusteringPage">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/clustering.svg</normaloff>:/icons/resources/icons/clustering.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>MCQR protein clustering</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_10">
              <item>
               <widget class="QLabel" name="label_58">
                <property name="sizePolicy">
                 <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                  <horstretch>0</horstretch>
                  <verstretch>0</verstretch>
                 </sizepolicy>
                </property>
                <property name="text">
                 <string>Select factors for clustering above</string>
                </property>
               </widget>
              </item>
              <item>
               <layout class="QFormLayout" name="formLayout_5">
                <item row="1" column="0">
                 <widget class="QLabel" name="label_59">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                  <property name="text">
                   <string>Number of protein clusters</string>
                  </property>
                 </widget>
                </item>
                <item row="1" column="1">
                 <widget class="QSpinBox" name="cluster_spin">
                  <property name="sizePolicy">
                   <sizepolicy hsizetype="Minimum" vsizetype="Maximum">
                    <horstretch>0</horstretch>
                    <verstretch>0</verstretch>
                   </sizepolicy>
                  </property>
                  <property name="maximum">
                   <number>20</number>
                  </property>
                  <property name="value">
                   <number>5</number>
                  </property>
                 </widget>
                </item>
                <item row="0" column="0">
                 <widget class="QLabel" name="label_5">
                  <property name="text">
                   <string>Clustering method</string>
                  </property>
                 </widget>
                </item>
                <item row="0" column="1">
                 <widget class="QComboBox" name="cluster_method_comboBox">
                  <item>
                   <property name="text">
                    <string>sota</string>
                   </property>
                  </item>
                  <item>
                   <property name="text">
                    <string>kmeans</string>
                   </property>
                  </item>
                 </widget>
                </item>
               </layout>
              </item>
              <item>
               <widget class="Line" name="line_19">
                <property name="orientation">
                 <enum>Qt::Horizontal</enum>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="a6clustering_btn">
                <property name="text">
                 <string>Run The protein clustering</string>
                </property>
                <property name="icon">
                 <iconset resource="../../../i2masschroq.qrc">
                  <normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</iconset>
                </property>
                <property name="iconSize">
                 <size>
                  <width>20</width>
                  <height>20</height>
                 </size>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a7proteinAnovaPage">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/icon_anova.svg</normaloff>:/icons/resources/icons/icon_anova.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>MCQR protein ANOVA</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_11">
              <item>
               <widget class="QLabel" name="label_60">
                <property name="font">
                 <font>
                  <bold>true</bold>
                 </font>
                </property>
                <property name="text">
                 <string>Drop low fold change peptides</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QLabel" name="label_61">
                <property name="text">
                 <string>Select the factors on which fold change will be perform</string>
                </property>
               </widget>
              </item>
              <item>
               <layout class="QHBoxLayout" name="horizontalLayout_29">
                <item>
                 <widget class="QLabel" name="label_73">
                  <property name="text">
                   <string>Fold change cut-off</string>
                  </property>
                 </widget>
                </item>
                <item>
                 <widget class="QDoubleSpinBox" name="anova_fc_cutoff_spin">
                  <property name="value">
                   <double>0.500000000000000</double>
                  </property>
                 </widget>
                </item>
               </layout>
              </item>
              <item>
               <widget class="Line" name="line_20">
                <property name="orientation">
                 <enum>Qt::Horizontal</enum>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QLabel" name="label_62">
                <property name="font">
                 <font>
                  <bold>true</bold>
                 </font>
                </property>
                <property name="text">
                 <string>Plot ANOVA</string>
                </property>
               </widget>
              </item>
              <item>
               <layout class="QHBoxLayout" name="horizontalLayout_24">
                <item>
                 <widget class="QLabel" name="label_63">
                  <property name="text">
                   <string>Interaction term declared (two factors selected)</string>
                  </property>
                 </widget>
                </item>
                <item>
                 <widget class="pappso::SwitchWidget" name="interaction_anova_switch" native="true"/>
                </item>
               </layout>
              </item>
              <item>
               <widget class="Line" name="line_22">
                <property name="orientation">
                 <enum>Qt::Horizontal</enum>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="a7_run_anova_btn">
                <property name="text">
                 <string>Run ANOVA</string>
                </property>
                <property name="icon">
                 <iconset resource="../../../i2masschroq.qrc">
                  <normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</iconset>
                </property>
                <property name="iconSize">
                 <size>
                  <width>20</width>
                  <height>20</height>
                 </size>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a8plotProteinAbundancePage">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/box_plot.svg</normaloff>:/icons/resources/icons/box_plot.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>MCQR plot protein abundance</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_12">
              <item>
               <widget class="QLabel" name="label_64">
                <property name="font">
                 <font>
                  <bold>true</bold>
                 </font>
                </property>
                <property name="text">
                 <string>Plot Tukey test</string>
                </property>
               </widget>
              </item>
              <item>
               <layout class="QFormLayout" name="formLayout_7">
                <item row="0" column="0">
                 <widget class="QLabel" name="label_67">
                  <property name="text">
                   <string>alpha cutoff</string>
                  </property>
                 </widget>
                </item>
                <item row="0" column="1">
                 <widget class="QDoubleSpinBox" name="alpha_spin">
                  <property name="decimals">
                   <number>3</number>
                  </property>
                  <property name="maximum">
                   <double>0.999000000000000</double>
                  </property>
                  <property name="singleStep">
                   <double>0.001000000000000</double>
                  </property>
                  <property name="value">
                   <double>0.050000000000000</double>
                  </property>
                 </widget>
                </item>
                <item row="1" column="0">
                 <widget class="QLabel" name="label_66">
                  <property name="text">
                   <string>Use p-value adjusted</string>
                  </property>
                 </widget>
                </item>
                <item row="1" column="1">
                 <layout class="QHBoxLayout" name="horizontalLayout_25">
                  <item>
                   <widget class="pappso::SwitchWidget" name="padjust_switch" native="true"/>
                  </item>
                 </layout>
                </item>
               </layout>
              </item>
              <item>
               <widget class="QLabel" name="label_69">
                <property name="text">
                 <string>Select factors to use as color above</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="Line" name="line_23">
                <property name="orientation">
                 <enum>Qt::Horizontal</enum>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QLabel" name="label_68">
                <property name="font">
                 <font>
                  <bold>true</bold>
                 </font>
                </property>
                <property name="text">
                 <string>Plot individual protein abundance</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QLabel" name="label_65">
                <property name="text">
                 <string>Select factors used in Tukey test above</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="Line" name="line_21">
                <property name="orientation">
                 <enum>Qt::Horizontal</enum>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="a8_run_tukey_btn">
                <property name="text">
                 <string>Run Tukey test</string>
                </property>
                <property name="icon">
                 <iconset resource="../../../i2masschroq.qrc">
                  <normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</iconset>
                </property>
                <property name="iconSize">
                 <size>
                  <width>20</width>
                  <height>20</height>
                 </size>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="a9proteinAbundanceFoldChangePage">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="icon">
              <iconset resource="../../../i2masschroq.qrc">
               <normaloff>:/icons/resources/icons/fc_abundance.svg</normaloff>:/icons/resources/icons/fc_abundance.svg</iconset>
             </attribute>
             <attribute name="label">
              <string>MCQR protein abundance fold change</string>
             </attribute>
             <layout class="QVBoxLayout" name="verticalLayout_13">
              <item>
               <layout class="QHBoxLayout" name="horizontalLayout_27">
                <item>
                 <layout class="QVBoxLayout" name="verticalLayout_16">
                  <item>
                   <widget class="QLabel" name="label_70">
                    <property name="font">
                     <font>
                      <bold>false</bold>
                     </font>
                    </property>
                    <property name="text">
                     <string>Factor</string>
                    </property>
                   </widget>
                  </item>
                  <item>
                   <widget class="McqrMetadataFactorComboBox" name="factorFoldChangeCombobox">
                    <property name="toolTip">
                     <string/>
                    </property>
                    <property name="currentText">
                     <string/>
                    </property>
                   </widget>
                  </item>
                 </layout>
                </item>
                <item>
                 <layout class="QVBoxLayout" name="verticalLayout_17">
                  <item>
                   <widget class="QLabel" name="label_71">
                    <property name="text">
                     <string>Numerator</string>
                    </property>
                   </widget>
                  </item>
                  <item>
                   <widget class="McqrMetadataFactorComboBox" name="numeratorFoldChangeCombobox"/>
                  </item>
                 </layout>
                </item>
                <item>
                 <layout class="QVBoxLayout" name="verticalLayout_18">
                  <item>
                   <widget class="QLabel" name="label_72">
                    <property name="text">
                     <string>Denominator</string>
                    </property>
                   </widget>
                  </item>
                  <item>
                   <widget class="McqrMetadataFactorComboBox" name="denominatorFoldChangeCombobox"/>
                  </item>
                 </layout>
                </item>
               </layout>
              </item>
              <item>
               <widget class="Line" name="line_24">
                <property name="orientation">
                 <enum>Qt::Horizontal</enum>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QPushButton" name="a9_fc_abundance_btn">
                <property name="text">
                 <string>Run protein abundance ratio</string>
                </property>
                <property name="icon">
                 <iconset resource="../../../i2masschroq.qrc">
                  <normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</normaloff>:/icons/resources/icons/mit/jamicons/cogs-f.svg</iconset>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
            <widget class="QWidget" name="zrscriptPage">
             <property name="geometry">
              <rect>
               <x>0</x>
               <y>0</y>
               <width>566</width>
               <height>510</height>
              </rect>
             </property>
             <attribute name="label">
              <string>Rscript</string>
             </attribute>
             <layout class="QFormLayout" name="formLayout_6">
              <item row="0" column="1">
               <widget class="QPushButton" name="downloadRscriptButton">
                <property name="text">
                 <string>download R script</string>
                </property>
               </widget>
              </item>
              <item row="1" column="1">
               <widget class="QPushButton" name="downloadRmdScriptButton">
                <property name="text">
                 <string>download Rmd script</string>
                </property>
               </widget>
              </item>
             </layout>
            </widget>
           </widget>
          </item>
         </layout>
        </widget>
        <widget class="WidgetRprocess" name="widgetRprocess" native="true"/>
       </widget>
      </item>
     </layout>
    </widget>
   </item>
   <item>
    <widget class="QStatusBar" name="statusbar"/>
   </item>
  </layout>
 </widget>
 <customwidgets>
  <customwidget>
   <class>WidgetRprocess</class>
   <extends>QWidget</extends>
   <header>./gui/widgets/widget_rprocess/widgetrprocess.h</header>
   <container>1</container>
  </customwidget>
  <customwidget>
   <class>McqrMetadataFactorListView</class>
   <extends>QListView</extends>
   <header>./gui/widgets/widget_rprocess/mcqrmetadatafactorlistview.h</header>
  </customwidget>
  <customwidget>
   <class>pappso::SwitchWidget</class>
   <extends>QWidget</extends>
   <header>pappsomspp/gui/switchbuttonwidget/switchbuttonwidget.h</header>
   <container>1</container>
  </customwidget>
  <customwidget>
   <class>McqrMetadataFactorComboBox</class>
   <extends>QComboBox</extends>
   <header>./gui/widgets/widget_rprocess/mcqrmetadatafactorcombobox.h</header>
  </customwidget>
  <customwidget>
   <class>McqrMetadataMsrunListView</class>
   <extends>QListView</extends>
   <header>./gui/widgets/widget_rprocess/mcqrmetadatamsrunlistview.h</header>
  </customwidget>
 </customwidgets>
 <resources>
  <include location="../../../i2masschroq.qrc"/>
 </resources>
 <connections>
  <connection>
   <sender>selectDirectoryButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doSelectWorkingDirectory()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>584</x>
     <y>519</y>
    </hint>
    <hint type="destinationlabel">
     <x>914</x>
     <y>340</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>downloadRscriptButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doGetRscript()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>229</x>
     <y>570</y>
    </hint>
    <hint type="destinationlabel">
     <x>403</x>
     <y>417</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>downloadRmdScriptButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doGetRmdScript()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>229</x>
     <y>734</y>
    </hint>
    <hint type="destinationlabel">
     <x>403</x>
     <y>417</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>getMetadataTemplateButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doGetMetadataTemplateFile()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>533</x>
     <y>178</y>
    </hint>
    <hint type="destinationlabel">
     <x>403</x>
     <y>417</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>uploadMetadataFileButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doUploadMetadataFile()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>533</x>
     <y>216</y>
    </hint>
    <hint type="destinationlabel">
     <x>403</x>
     <y>465</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a2a2_pca_pushButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA2A2McqrPca()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>628</x>
     <y>548</y>
    </hint>
    <hint type="destinationlabel">
     <x>1000</x>
     <y>431</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a3a1pushButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA3A1McqrRemoveMsrun()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>180</x>
     <y>528</y>
    </hint>
    <hint type="destinationlabel">
     <x>403</x>
     <y>482</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a5heatmap_btn</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA5McqrHeatmap()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>462</x>
     <y>677</y>
    </hint>
    <hint type="destinationlabel">
     <x>848</x>
     <y>724</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a4proteinFilterButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA4McqrProteinFilter()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>425</x>
     <y>375</y>
    </hint>
    <hint type="destinationlabel">
     <x>842</x>
     <y>371</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a6clustering_btn</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA6McqrCluster()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>349</x>
     <y>714</y>
    </hint>
    <hint type="destinationlabel">
     <x>942</x>
     <y>777</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a7_run_anova_btn</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA7McqrAnova()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>453</x>
     <y>751</y>
    </hint>
    <hint type="destinationlabel">
     <x>1019</x>
     <y>811</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a8_run_tukey_btn</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA8McqrPlotProteinAbundance()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>337</x>
     <y>788</y>
    </hint>
    <hint type="destinationlabel">
     <x>898</x>
     <y>828</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>a9_fc_abundance_btn</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doA9McqrProteinAbundanceFoldChange()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>434</x>
     <y>850</y>
    </hint>
    <hint type="destinationlabel">
     <x>962</x>
     <y>868</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>factorFoldChangeCombobox</sender>
   <signal>currentTextChanged(QString)</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doFactorProteinFoldSelected(QString)</slot>
   <hints>
    <hint type="sourcelabel">
     <x>148</x>
     <y>803</y>
    </hint>
    <hint type="destinationlabel">
     <x>985</x>
     <y>626</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>pushButton</sender>
   <signal>clicked()</signal>
   <receiver>McqrScRunView</receiver>
   <slot>doGetSpectrumCountTable()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>366</x>
     <y>546</y>
    </hint>
    <hint type="destinationlabel">
     <x>1125</x>
     <y>595</y>
    </hint>
   </hints>
  </connection>
 </connections>
 <slots>
  <slot>doSelectMasschroqMlFile()</slot>
  <slot>doSelectWorkingDirectory()</slot>
  <slot>doGetMetadataTemplateFile()</slot>
  <slot>doUploadMetadataFile()</slot>
  <slot>doGetRscript()</slot>
  <slot>doGetRmdScript()</slot>
  <slot>doFactorProteinFoldSelected(QString)</slot>
  <slot>doA3A1McqrRemoveMsrun()</slot>
  <slot>doNormalisationMethodChanged(QString)</slot>
  <slot>doA4A2McqrNormRemoveMsrun()</slot>
  <slot>doA2A2McqrPca()</slot>
  <slot>doA3A2McqrProteinFilter()</slot>
  <slot>doA5McqrHeatmap()</slot>
  <slot>doA4McqrProteinFilter()</slot>
  <slot>doA6McqrCluster()</slot>
  <slot>doA7McqrAnova()</slot>
  <slot>doA8McqrPlotProteinAbundance()</slot>
  <slot>doA9McqrProteinAbundanceFoldChange()</slot>
  <slot>doGetSpectrumCountTable()</slot>
 </slots>
 <buttongroups>
  <buttongroup name="buttonGroup"/>
 </buttongroups>
</ui>
