i2masschroq (1.3.7-1~trixie1) trixie; urgency=medium

  * Sage integration fixes for version 0.15.0-beta.2 (URL vs filepath,
  Windows vs Linux behaviour)
  * Translation of Sage timstof scannr to PAPPSOms++ library tims index
  * Fix signal/slot problem in XIC viewer
  * Fix issue #49
  Thanks to Jonas Grossmann <jonas.grossmann@fgcz.uzh.ch> and the ETH Zürich team
  for the bug reports and tests

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 10 Jun 2026 13:24:54 +0200

i2masschroq (1.3.6-1~trixie1) trixie; urgency=medium

  * Important bug fixed : https://forge.inrae.fr/pappso/i2masschroq/-/work_items/48
    Thanks to Thierry Balliau <Thierry.Balliau@inrae.fr> for the bug report

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 May 2026 15:46:23 +0200

i2masschroq (1.3.5-1~trixie1) trixie; urgency=medium

  * Fix sage binary file check in the gui
  * Update for sage 0.15.0-beta.2 compliance

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 11 May 2026 12:19:41 +0200

i2masschroq (1.3.4-2~trixie1) trixie; urgency=medium

  * Fix masschroq3 run arguments
  * Sage user interface displays static and variable modifications

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 20 Mar 2026 15:36:38 +0100

i2masschroq (1.3.3-1~trixie1) trixie; urgency=medium

  * Fix broken Windows11 support for TimsTOFpro data file

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 05 Dec 2025 10:56:32 +0100

i2masschroq (1.3.2-1~trixie2) trixie; urgency=medium

  * Unlock UNIMOD and USER defined OBO terms to use in xpip projects

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 02 Dec 2025 12:12:27 +0100

i2masschroq (1.3.2-1~trixie1) trixie; urgency=medium

  * fix PSM CBOR sage reader problem
  * mzCBOR support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 02 Dec 2025 10:48:34 +0100

i2masschroq (1.3.1-1~trixie1) trixie; urgency=medium

  * New Sage reader usgin PSM CBOR
  * New Sage user interface
  * Fix istope deviation vizualisation for isotope error negative delta
  * Change Tukey in MCQR scripts (Thierry Balliau)
  * Install new bioconductor version for R 4.5
  * Typst documentation translation from docbook almost done
  * Qt6svg plugin dependency added

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 18 Nov 2025 13:11:47 +0100

i2masschroq (1.3.0-3~trixie1) trixie; urgency=medium

  * Fix dependencies

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 08 Oct 2025 10:38:20 +0200

i2masschroq (1.3.0-2~trixie1) trixie; urgency=medium

  * be sure to compile with newest libpwiz and libboost 1.88

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 08 Oct 2025 10:21:56 +0200

i2masschroq (1.3.0-1~trixie2) trixie; urgency=medium

  * be sure to compile with newest libpwiz and libboost

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 30 Sep 2025 16:57:15 +0200

i2masschroq (1.3.0-1~trixie1) trixie; urgency=medium

  * First package for Debian 13 Trixie
  * Move to the newly organized PAPPSOms++ 0.11 library
  * MassChroQ3 json export contains msrun list

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 22 Sep 2025 10:20:20 +0200

i2masschroq (1.2.9-3~bookworm1) bookworm; urgency=medium

  * add new R dependency : "zip"

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 12 Sep 2025 09:12:48 +0200

i2masschroq (1.2.9-2~bookworm1) bookworm; urgency=medium

  * add new R dependencies : "scales" and "tidyselect"

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 08 Sep 2025 10:29:59 +0200

i2masschroq (1.2.9-1~bookworm1) bookworm; urgency=medium

  * Choose "https://pbil.univ-lyon1.fr/CRAN/" for the default
  CRAN repository, to install MCQR dependencies

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 08 Sep 2025 09:39:40 +0200

i2masschroq (1.2.8-1~bookworm1) bookworm; urgency=medium

  * Check R package installation for MCQR updated

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 04 Sep 2025 11:59:08 +0200

i2masschroq (1.2.7-1~bookworm1) bookworm; urgency=medium

  * Set working directory for slurm jobs
  * Fix JSON alignment
  * PTM grouping in ODS export
  * Enable MBR and isotope ratio parameters in MassChroQ3 run dialog
  * Better Sage run dialog
  * PSM JSON export for Typst

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 04 Sep 2025 11:01:25 +0200

i2masschroq (1.2.6-1~bookworm1) bookworm; urgency=medium

  * Fix running masschroq3 in slurm

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 02 Jun 2025 13:41:30 +0200

i2masschroq (1.2.5-1~bookworm1) bookworm; urgency=medium

  * Experimental Sage run GUI

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 12 May 2025 13:17:27 +0200

i2masschroq (1.2.4-1~bookworm1) bookworm; urgency=medium

  * masschroq-export CLI fixed for alignment data
  * Full support for PSI ProForma v2 : UNIMOD, Nter and Cter modifications

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 05 May 2025 14:05:06 +0200

i2masschroq (1.2.3-1~bookworm1) bookworm; urgency=medium

  * XIC viewer is able to open any other MS run (mzML, TDF...)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 18 Mar 2025 09:01:21 +0100

i2masschroq (1.2.2-1~bookworm1) bookworm; urgency=medium

  * MCQR 1.0.2

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 17 Mar 2025 13:21:21 +0100

i2masschroq (1.2.1-1~bookworm1) bookworm; urgency=medium

  * Fix regression using Evalue in FDR threshold

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 05 Mar 2025 09:35:30 +0100

i2masschroq (1.2.0-1~bookworm1) bookworm; urgency=medium

  * Switch to C++20
  * Complete integration of MassChroQ version 3 through PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 04 Mar 2025 10:55:41 +0100

i2masschroq (1.0.23-1~bookworm2) bookworm; urgency=medium

  * Support for Sage protein Qscore
  * Display protein Q-value in protein list
  * Filter results on protein Q-value

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 27 Jan 2025 11:27:01 +0100

i2masschroq (1.0.22-1~bookworm1) bookworm; urgency=medium

  * MCQR 1.0.1
  * Work in progress store Sage protein QValue
  * Export project name in project parameters
  * Display samle name instead of filenam in XIC view

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 24 Jan 2025 15:39:06 +0100

i2masschroq (1.0.21-1~bookworm1) bookworm; urgency=medium

  * Recognize mzIdentML file
  * Get the identification search engine name and version (needed by ProteoBench)
  * Solves an issue loading xpip file generated with PEAKS identification results

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 18 Dec 2024 15:49:16 +0100

i2masschroq (1.0.20-1~bookworm1) bookworm; urgency=medium

  * Solving issue with MassChroQ module + tandem results in mzid format

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 02 Dec 2024 16:21:22 +0100

i2masschroq (1.0.19-1~bookworm1) bookworm; urgency=medium

  * Fix for issue #37 : close MCQR windows
  * WIP : issue #36, work on multiple sample support in mzid
  * New msrunretention time API in PAPPSOms++
  * First Peaks Studio support
  * Better SAGE support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 25 Nov 2024 15:01:07 +0100

i2masschroq (1.0.18-1~bookworm1) bookworm; urgency=medium

  * fix for issue #34 : ptm exports on individual projects
  * new i2masschroq icon set
  * better spectral count R markdown export
  * remove old spectral count export
  * new ui to replace modifications on specific amino acid
  * support for Sage results containing several samples
  * read decoy regexp from sage results
  * support for proteobench metadata for Sage identifications

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 18 Oct 2024 14:23:35 +0200

i2masschroq (1.0.17-1~bookworm1) bookworm; urgency=medium

  * Better peptide list windows
  * Better msrun identification list windows
  * WIP for Sage support
  * Avoid loss of shared pointer during msrun statistics parsing process

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 10 Sep 2024 09:12:22 +0200

i2masschroq (1.0.16-1~bookworm1) bookworm; urgency=medium

  * Switch to new libpappsoms++ tims dda/dia API

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 16 Jul 2024 10:28:02 +0200

i2masschroq (1.0.15-1~bookworm1) bookworm; urgency=medium

  * Switch from HTCondor to Slurm
  * Load mzid files by default
  * Fix multiple occurence of fasta files when reading multiple mzid files

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 26 Jun 2024 14:05:17 +0200

i2masschroq (1.0.14-1~bookworm2) bookworm; urgency=medium

  * Fix condor job QUEUE for submit file

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 17 Jun 2024 10:45:41 +0200

i2masschroq (1.0.14-1~bookworm1) bookworm; urgency=medium

  * Fasta file export of all valid proteins
  * Install mime type informations for xpip file support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 17 Jun 2024 08:48:46 +0200

i2masschroq (1.0.13-1~bookworm1) bookworm; urgency=medium

  * Bunch of issues found by Thierry Balliau fixed (#29 #30 #31 #32)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 14 Jun 2024 14:12:11 +0200

i2masschroq (1.0.12-1~bookworm1) bookworm; urgency=medium

  * Read xpip stats converting integer and float
  * Display precursor intensity
  * MCQR 0.6.15
  * remove tandemwrapper use

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 27 May 2024 16:08:59 +0200

i2masschroq (1.0.11-1~bookworm1) bookworm; urgency=medium

  * better mzIdentML file parser
  * set mzid output to yes in default presets parameter files
  * display the refine maximum missed cleavage parameter for X!Tandem 2017

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 13 May 2024 10:29:06 +0200

i2masschroq (1.0.10-1~bookworm1) bookworm; urgency=medium

  * Refactoring : generic project parameters replacing tandem parameters

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 26 Apr 2024 14:17:11 +0200

i2masschroq (1.0.9-1~bookworm1) bookworm; urgency=medium

  * Project parameter object to collect valuable parameters for the whole project
  * MCQR 0.6.14
  * Zip file export for ProteoBench

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 14 Apr 2024 13:39:06 +0200

i2masschroq (1.0.8-1~bookworm1) bookworm; urgency=medium

  * Better pepxml modifications import (MSF compliant)
  * TandemNG provided in win64 setup.exe
  * Fix for spectral count export by protein subgroups (thanks to Carine Machado for the bug report)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 09 Mar 2024 13:45:30 +0100

i2masschroq (1.0.7-1~bookworm1) bookworm; urgency=medium

  [ Olivier Langella ]
  * Proteobench export button
  * Better handler for R process finished signal
  [ Filippo Rusconi ]
  * Rename remaining xtpcpp references to i2MassChroQ
  * Improved copyright references as requested by reviewers

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 01 Mar 2024 10:44:05 +0100

i2masschroq (1.0.6-1~bookworm1) bookworm; urgency=medium

  * fix MzIdentML parser error on empty peptide hit results

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 05 Feb 2024 09:13:25 +0100

i2masschroq (1.0.5-1~bookworm1) bookworm; urgency=medium

  * support for MassChroQ XSD schema version 2.6 (spectrum index)
  * select tandmng by default for peptide identification

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 01 Feb 2024 13:31:56 +0100

i2masschroq (1.0.4-1~bookworm1) bookworm; urgency=medium

  * MCQR update to 0.6.11
  * fix experimental mass to charge mzIdentML handler
  * integration of tandemng mzIdentML results

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 30 Jan 2024 14:17:35 +0100

i2masschroq (1.0.3-1~bookworm1) bookworm; urgency=medium

  * GUI for spectral count analysis using MCQR and fix for #24

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 22 Dec 2023 11:01:48 +0100

i2masschroq (1.0.2-1~bookworm1) bookworm; urgency=medium

  * display ProForma peptide sequence in peptide details
    https://www.psidev.info/proforma
  * fix reprepro filter issue #25

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 20 Dec 2023 13:53:12 +0100

i2masschroq (1.0.1-1~bookworm1) bookworm; urgency=medium

  * using updated PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 04 Dec 2023 10:56:03 +0100

i2masschroq (1.0.0-1~bookworm1) bookworm; urgency=medium

  [ Filippo Rusconi ]

  * documentation for the MSstats software integration
  * rework on R graphical integration with Olivier

  [ Olivier Langella ]

  * Numerous MCQR workflow changes, fixing issues #21 #22 #23

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 06 Nov 2023 08:45:29 +0100

i2masschroq (0.7.1-1~bookworm1) bookworm; urgency=medium

  * fix R typo

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 02 Oct 2023 15:39:30 +0200

i2masschroq (0.7.0-1~bookworm1) bookworm; urgency=medium

  * fix peptide search string problem in peptide list view
  * fix pointer differences on C13N15 modifications
  * replay MCQR normalization, dubious filter, unreproducible peptides in MCQR

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 29 Sep 2023 11:46:39 +0200

i2masschroq (0.6.9-1~bookworm1) bookworm; urgency=medium

  * proposed fix for issue #20 (closing waiting dialog window)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 21 Sep 2023 11:38:11 +0200

i2masschroq (0.6.8-1~bookworm1) bookworm; urgency=medium

  * get rid of remaining Qt5 cmake procedures
  * number of distinct peptide sequences in ms identification run view
  * Next generation MCQR integration (complete label free workflow, Rmd output)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 20 Sep 2023 09:48:25 +0200

i2masschroq (0.6.7-1~bookworm1) bookworm; urgency=medium

  * fix for issue #18 : xic quantification parameter management

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 30 Aug 2023 13:22:52 +0200

i2masschroq (0.6.6-1~bookworm1) bookworm; urgency=medium

  * fix rare issue TIDD : check linear regression for NaN coefficient of determination
  * check for default R personal library directory before R package install
  * new Full_C13N15 labeling method, first test OK

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 23 Aug 2023 11:31:12 +0200

i2masschroq (0.6.5-1~bookworm1) bookworm; urgency=medium

  * fix mzidentml reader to ensure compatibility with specoms 0.0.16
  * implementation of X!Tandem residue mass parameters
  * WIP: C13N15 support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 19 Jul 2023 15:44:15 +0200

i2masschroq (0.6.4-1~bookworm1) bookworm; urgency=medium

  * new column to display peptide chemical formula in peptide list view
  * dataprocess of MSstats using featuerSubset=all
  * display the background filter used by MassChroQ for XIC quantification

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 07 Jul 2023 12:55:28 +0200

i2masschroq (0.6.3-2~bookworm1) bookworm; urgency=medium

  * bookworm package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 16 Jun 2023 19:17:33 +0200

i2masschroq (0.6.3-1~bullseye1) bullseye; urgency=medium

  * Msidentification run list display overall MSrun assignment percentage
  * Cool Rms output file
  * logtrans choice in MSstats gui

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 11 Jun 2023 18:08:08 +0200

i2masschroq (0.6.2-1~bullseye1) bullseye; urgency=medium

  * better MSstats interface, MCQR dubious data filter, graphics

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 06 Jun 2023 09:08:10 +0200

i2masschroq (0.6.1-1~bullseye1) bullseye; urgency=medium

  * issues fixed #14 #15 #16, tests needed
  * fix spectra assigned and assignment percentage

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 01 Jun 2023 08:49:19 +0200

i2masschroq (0.6.0-1~bullseye1) bullseye; urgency=medium

  * error stream flushed in tandemwrapper
  * fix protein and peptide list search interface
  * new Rprocess widget
  * integration of MSstats

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 31 May 2023 11:51:51 +0200

i2masschroq (0.4.77-1~bullseye1) bullseye; urgency=medium

  * use isotope ratio in TIDD features (maybe slower)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 04 May 2023 15:53:58 +0200

i2masschroq (0.4.76-1~bullseye1) bullseye; urgency=medium

  * Full Qt6 switch

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 17 Mar 2023 13:41:48 +0100

i2masschroq (0.4.75-1~bullseye1) bullseye; urgency=medium

  * set requested memory for MassChroQ HTCondor run
  * complete info ODS sheet for TIDD parameters
  * secure XIC box widget code (bug reported by
  Willy Bienvenut <willy.bienvenut@universite-paris-saclay.fr>)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 23 Feb 2023 09:32:00 +0100

i2masschroq (0.4.74-1~bullseye1) bullseye; urgency=medium

  * Finally fix fdr spinbox annoying bug

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 22 Feb 2023 09:05:36 +0100

i2masschroq (0.4.73-1~bullseye1) bullseye; urgency=medium

  * Detect mass spectrometer family and propose appropriate parameters
  * fix annoying Evalue display bug

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 21 Feb 2023 16:29:42 +0100

i2masschroq (0.4.72-1~bullseye1) bullseye; urgency=medium

  * restore FDR parameter
  * PSM count changed to avoid redundance by proteins, thanks to
  Lydie Correia <lydie.oliveira-correia@inrae.fr>
  * choose project name as default export filenames
  * MCQR 0.6.8
  * MassChroQ TSV exports, no choice anymore

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 01 Feb 2023 13:04:07 +0100

i2masschroq (0.4.71-1~bullseye1) bullseye; urgency=medium

  * fix MXE compilation flags
  * fix xpip file selection problem
  * ensure mass delta list is sorted before computing mean
  * new TimsTOF polynomial solver

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 06 Jan 2023 11:00:37 +0100

i2masschroq (0.4.70-1~bullseye1) bullseye; urgency=medium

  * do not produce rdata output file for MassChroQ

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 08 Dec 2022 13:19:39 +0100

i2masschroq (0.4.69-1~bullseye1) bullseye; urgency=medium

  * code review to remove all remaining XML parser and regular expression not QT6 compliant
  * fix htcondor masschroq submission
  * compute spectra assignment ratio depending on peptide filters

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 08 Dec 2022 11:47:47 +0100

i2masschroq (0.4.68-1~bullseye1) bullseye; urgency=medium

  * i2MassChroQ filter parameters written in the MassChroqML file as comments
  * reconnect the MCQR XIC action menu

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 22 Nov 2022 09:46:21 +0100

i2masschroq (0.4.67-1~bullseye1) bullseye; urgency=medium

  * fix detection Zivy parameters to really take into account what's in the form
  * project name displayed and editable
  * no automatic prompt of the protein list

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 31 Oct 2022 16:51:05 +0100

i2masschroq (0.4.66-1~bullseye1) bullseye; urgency=medium

  * fix selection of contaminant or decoy sequence (fasta files or regexp)
  * filter SVM prob at the protein level with a threshold on the minimum value of the best PSM prob

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 17 Oct 2022 15:56:22 +0200

i2masschroq (0.4.65-1~bullseye1) bullseye; urgency=medium

  * newer version of MCQR 0.6.5
  * consecutive ratio feature for TIDD computed as a ratio
  * column svm prob in peptide list
  * save and load xpip with svmprob params
  * rerun TIDD without feature extraction

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 13 Oct 2022 10:55:41 +0200

i2masschroq (0.4.64-1~bullseye1) bullseye; urgency=medium

  * better TIDD computing API
  * fix xpip reader bug on labeling experiment
  * better tandem parameter reader

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 10 Oct 2022 08:56:58 +0200

i2masschroq (0.4.63-1~bullseye1) bullseye; urgency=medium

  * integration of the TIDD method https://pubmed.ncbi.nlm.nih.gov/35354356/
  * PSM features displayed in the peptide detail window
  * moving SAX pepxml reader to xml stream reader
  * moving SAX tandem reader to xml stream reader
  * moving SAX xpip reader to xml stream reader

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 05 Oct 2022 12:49:24 +0200

i2masschroq (0.4.62-1~bullseye1) bullseye; urgency=medium

  * new release using pappsoms++ 0.8.53
  * get rid of librdata

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 30 Jun 2022 13:53:42 +0200

i2masschroq (0.4.61-1~bullseye1) bullseye; urgency=medium

  * faster timstof reader
  * MassChroQ.exe embeded for the windows version
  * guess the masschroq.exe file path
  * MCQR_0.6.3
  * fix version upgrade windows title

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 23 Jun 2022 15:10:26 +0200

i2masschroq (0.4.60-1~bullseye1) bullseye; urgency=medium

  * fix RScript working and temporary directory for Windows
  * fix mzxmlconverter for Windows
  * code cleaning

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 01 Jun 2022 11:22:10 +0200

i2masschroq (0.4.59-1~bullseye1) bullseye; urgency=medium

  * enable load tandem preset button by default
  * fix problem loading peptide quantification file for MCQR integration
  * choose TSV output by default to run MassChroQ

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 12 May 2022 10:39:38 +0200

i2masschroq (0.4.58-1~bullseye1) bullseye; urgency=medium

  * better ODS MCQR metadata parser
  * brings back apply button to modify FDR settings
  * clear waiting message dialog to avoid annoying "text label"

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 09 May 2022 16:34:54 +0200

i2masschroq (0.4.57-1~bullseye1) bullseye; urgency=medium

  * MCQR integration bug fix thanks to Thierry Balliau
    (masschroqML file grouping informations, protein list)
  * transition from X!TandemPipeline^

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 27 Apr 2022 10:18:53 +0200

i2masschroq (0.4.56-1~bullseye1) bullseye; urgency=medium

  * no compression for PDF documentation

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 Apr 2022 16:33:33 +0200

i2masschroq (0.4.55-1~bullseye1) bullseye; urgency=medium

  [ Filippo Rusconi ]

  * better package transition mecanism

  [ Olivier Langella ]

  * new MCQR 0.6.2
  * debugging MCQR spectral count scripts
  * new McqrMetaData structure

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 Apr 2022 13:32:02 +0200

i2masschroq (0.4.54-1~bullseye1) bullseye; urgency=medium

  * new package for Debian bullseye

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 22 Mar 2022 15:54:40 +0100

i2masschroq (0.4.54-1) unstable; urgency=low

  * This is a new package (source and binary ones) that is an exact replicate
    of xtpcpp but with the name change to i2MassChroQ. This name change is
    required because of the publication that is being prepared to describe
    this software by this new name.

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 18 Mar 2022 11:20:45 +0100

xtpcp (0.4.53-1) unstable; urgency=low

  * New package to ensure non-source-only upload (xtpcpp-tools is new).

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 16 Mar 2022 21:40:28 +0100

xtpcpp (0.4.52-1) unstable; urgency=low

  * New upstream version depending on libpappsomspp >= 0.8.49.

  * Added a new command line tool.

  * New xtpcpp-tools package replacing the xtpcpp-tandemwrapper.

  * Written new user manual section and improved others.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 16 Mar 2022 16:01:28 +0100

xtpcpp (0.4.51-1) unstable; urgency=medium

  * New upstream release now building on top of libpappsomspp 0.8.48 (Closes:
    #1005151, thanks to Adrian Bunk <bunk@debian.org>).

  [ Filippo Rusconi ]

  * betterment of the whole manual
  * rename the binary package from tandemwrapper to xtpcpp-tandemwrapper

  [ Olivier Langella ]

  * replacement of old sax based XML parsers for tandem presets and HTCondor
  * new test on XML parsers
  * new formula column added in the peptide ODS output

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 09 Feb 2022 15:33:40 +0100

xtpcpp (0.4.49-1~bullseye1) bullseye; urgency=medium

  [ Olivier Langella ]
  * gui label fix
  * duplicated xml group ids in proticdbml fixed thanks to Kevin ROGER <kevin.roger@inserm.fr>
  [ Filippo Rusconi ]
  * going forward with the user manual, almost done

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 13 Jan 2022 09:32:56 +0100

xtpcpp (0.4.48-1~bullseye1) bullseye; urgency=medium

  * fix XIC reextract bug

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 11 Jan 2022 09:31:29 +0100

xtpcpp (0.4.47-1~bullseye1) bullseye; urgency=medium

  * refactoring MCQ settings for timsTOF
  * select R binary path in preferences
  * fix grantlee plugin problem for win64 installation thanks to Kevin ROGER <kevin.roger@inserm.fr>

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 07 Jan 2022 09:12:11 +0100

xtpcpp (0.4.46-1~bullseye2) bullseye; urgency=medium

  * fix mess between xtpcpp and tandemwrapper install instructions

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 03 Jan 2022 11:07:56 +0100

xtpcpp (0.4.46-1~bullseye1) bullseye; urgency=medium

  [ Olivier Langella ]
  * tandemwrapper added to xtpcpp distribution
  * new tandem parser, fix for tdf sample name
  * remove quantile filter integration for timsTOF pro
  * lots of fix to integrate R process into xtpcpp: basic XIC analysis
  available in production
  [ Filippo Rusconi ]
  * going forward with the user manual

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 03 Jan 2022 09:26:54 +0100

xtpcpp (0.4.45-1~bullseye1) bullseye; urgency=medium

  [ Olivier Langella ]
  * display ion sequence in peptide detail status bar
  [ Filippo Rusconi ]
  * going forward with the user manual

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 21 Dec 2021 08:56:40 +0100

xtpcpp (0.4.44-1~bullseye1) bullseye; urgency=medium

  [ Olivier Langella ]
  * fix fragment ion tags bearing phospho acid loss
  [ Filippo Rusconi ]
  * going forward with the user manual (phophoproteomics)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 16 Dec 2021 13:25:05 +0100

xtpcpp (0.4.43-2~bullseye1) bullseye; urgency=medium

  * new libpappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 11 Dec 2021 16:29:18 +0100

xtpcpp (0.4.43-1~bullseye1) bullseye; urgency=medium

  * new package for bullseye

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 26 Nov 2021 15:08:12 +0100

xtpcpp (0.4.43-1) unstable; urgency=low

  * New upstream release (see below).

  * d/control and company: Add required dependencies for the user manual and
    all the d/<files> to package and ship the user manual.

  * The package xtpcpp-doc now ships the user manual in HTML and PDF formats.

  * d/watch: add the file pointing to the forgemia GitLab instance.

  * d/control: add graphviz to build deps for the dot binary.

  * Standards-Version: 4.6.0

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 12 Nov 2021 16:32:16 +0100

xtpcpp (0.4.42-1~buster1) buster; urgency=medium

  * better tandem run wrapper progression windows
  * fix issue #73
  * new support for timsTOF compression type 1

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 05 Nov 2021 16:36:57 +0100

xtpcpp (0.4.41-1~buster1) buster; urgency=medium

  * MCQR intergration work
  * display and export ion mobility informations

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 05 Oct 2021 15:38:42 +0200

xtpcpp (0.4.40-2~buster1) buster; urgency=medium

  * a bit of refactoring to ensure MCQR dialog on MassChroQ data

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 25 Sep 2021 06:47:04 +0200

xtpcpp (0.4.40-1~buster1) buster; urgency=medium

  * fix MassChroQ process control problem

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 24 Sep 2021 09:01:27 +0200

xtpcpp (0.4.39-1~buster1) buster; urgency=medium

  * better MCQR integration added by Thomas Renne <thomas.renne@e.email>
  * output format added for MassChroQ v2.4

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 15 Sep 2021 14:36:02 +0200

xtpcpp (0.4.38-1~buster1) buster; urgency=medium

  * MCQR statistics on spectral count data available
    (https://forgemia.inra.fr/pappso/xtpcpp/-/merge_requests/57)
    , Thomas Renne <thomas.renne@e.email>

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 24 Aug 2021 16:18:37 +0200

xtpcpp (0.4.37-1~buster1) buster; urgency=medium

  * Specific sequence count bug fixed (introduced in 0.4.35)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 21 Jul 2021 14:59:33 +0200

xtpcpp (0.4.36-1~buster1) buster; urgency=medium

  * deepprot FDR computation bug fixed
  * protein list accession search bug fixed
  * msrun store bug fixed
  * msrun id problem fixed in the mzIdentML parser

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 19 Jul 2021 16:06:53 +0200

xtpcpp (0.4.35-1~buster1) buster; urgency=medium

  * better stop process interface
  * unique fasta files in sample output
  * sample names in simple output
  * better performances to count specific spectra
  * add spectral count analysis of SDS experiment with MCQR, Thomas Renne <thomas.renne@e.email>
  * documentation progress: fundamentals in bottom up proteomics, exploring identification data, Filippo Rusconi <lopippo@debian.org>

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 16 Jul 2021 15:03:40 +0200

xtpcpp (0.4.34-2~buster1) buster; urgency=medium

  * fix #68
  * better stop API management

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 30 Jun 2021 13:05:19 +0200

xtpcpp (0.4.34-1~buster1) buster; urgency=medium

  * first MCQR integration, Thomas Renne <thomas.renne@e.email>
  * NSAF bug fix #65
  * concurency problem fixed for submonitor
  * specific output "simple" dedicated to OMS results study

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 30 Jun 2021 09:42:22 +0200

xtpcpp (0.4.33-1~buster1) buster; urgency=medium

  * documentation progress: protein list, peptide list, detail, xic, Filippo Rusconi <lopippo@debian.org>
  * MassChroQ execution using signals and slots
  * better MSGF+ support #66
  * UNIMOD conversion to PSI mod
  * fix for issue #67 concerning TimsTOF data support reported by Aaron Wiles

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 27 Jun 2021 10:19:18 +0200

xtpcpp (0.4.32-1~buster1) buster; urgency=medium

  * fix XIC generation using scan index problem

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 15 Jun 2021 09:18:08 +0200

xtpcpp (0.4.31-1~buster1) buster; urgency=medium

  * new PAPPSOms++ library
  * user interface cleaning, Filippo Rusconi <lopippo@debian.org>
  * starting documentation using docbook, Filippo Rusconi <lopippo@debian.org>

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 11 Jun 2021 09:13:12 +0200

xtpcpp (0.4.30-1~buster1) buster; urgency=medium

  * using new tandem error exception
  * using tandemwrapper for any tandem identification in an HTCondor job

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 20 May 2021 11:56:44 +0200

xtpcpp (0.4.29-1~buster1) buster; urgency=medium

  * new XIC extractor API
  * begining documentation
  * new spectrum index column
  * tandem execution progress messages and stop
  * use tandem wrapper with mzML

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 12 May 2021 18:19:26 +0200

xtpcpp (0.4.28-1~buster1) buster; urgency=medium

  * crash fix
  * better deepprot studio
  * new widgets to handle OBO terms

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 21 Apr 2021 15:33:19 +0200

xtpcpp (0.4.27-1~buster1) buster; urgency=medium

  * first version of a working DeepProt studio

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 05 Apr 2021 17:26:14 +0200

xtpcpp (0.4.26-1~buster2) buster; urgency=medium

  * little glitch

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 02 Apr 2021 15:22:18 +0200

xtpcpp (0.4.26-1~buster1) buster; urgency=medium

  * improvements for the Bruker's user meeting

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 01 Apr 2021 15:10:34 +0200

xtpcpp (0.4.26-1) unstable; urgency=low

  * New upstream version now depending on librdata and libgrantlee5.

  * Standards-Version: 4.5.1 (no change done).

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 02 Mar 2021 20:51:39 +0100

xtpcpp (0.4.25-1~buster1) buster; urgency=medium

  * fix for issue #52 https://forgemia.inra.fr/pappso/xtpcpp/-/issues/52

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 10 Mar 2021 13:05:48 +0100

xtpcpp (0.4.24-1~buster1) buster; urgency=medium

  * TimsTOF XIC extraction and display
  * Display mobility coordinates on timstof identified peptides

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 04 Mar 2021 13:19:00 +0100

xtpcpp (0.4.23-1~buster1) buster; urgency=medium

  * better mzIdentML file parsing
  * thread concurency problem fixed
  * display mzformat in peptide view

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 24 Feb 2021 10:20:46 +0100

xtpcpp (0.4.22-1~buster1) buster; urgency=medium

  * config filename reversed to xtpcpp

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 08 Feb 2021 14:27:40 +0100

xtpcpp (0.4.21-1~buster1) buster; urgency=medium

  * mgf absolute file path

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 05 Feb 2021 13:43:40 +0100

xtpcpp (0.4.20-1~buster1) buster; urgency=medium

  * fix recongnizing mgf files in tdf directory

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 05 Feb 2021 10:46:18 +0100

xtpcpp (0.4.19-1~buster1) buster; urgency=medium

  * MCQR work, integration is coming using librdata
  * MzIdentML parser is back
  * Handles DeepProt Open Modification Search results files
  * New XPIP structure to store alignment parameters

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 01 Feb 2021 14:11:11 +0100

xtpcpp (0.4.18-1) unstable; urgency=low

  * New upstream version fixing a number of upstream-reported bugs.
  * Now depends on libpappsomspp 0.8.15.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 06 Jan 2021 15:48:09 +0100

xtpcpp (0.4.18-1~buster1) buster; urgency=medium

  * fix for issue https://forgemia.inra.fr/pappso/xtpcpp/-/issues/44
  * use of latest PAPPSOms++ library 0.8.14

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 17 Dec 2020 10:41:20 +0100

xtpcpp (0.4.17-1~buster1) buster; urgency=medium

  * buster package
  * bunch of fixed issues #27 #40 #41 #42 (XIC data file export, better xtandem preset ui,
    mgf batch, masschroq parameter alignment files fixed)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 10 Dec 2020 14:45:20 +0100

xtpcpp (0.4.16-1) unstable; urgency=low

  * New version that requires libpappsomspp 0.8.13.

  * Fix bug #976512 (Closes: #976512). Thanks to Lucas Nussbaum
    <lucas@debian.org> for the report.

  * Fix bug reported by Vagrant Cascadian <vagrant@reproducible-builds.org>.
    Thanks for the report! (Closes: #976071).

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 08 Dec 2020 20:48:29 +0100

xtpcpp (0.4.15-1) buster; urgency=medium

  * little fix concerning masschroq binary file path

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 24 Nov 2020 16:32:12 +0100

xtpcpp (0.4.14-1) buster; urgency=medium

  * fix for issue #38

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 19 Nov 2020 10:10:18 +0100

xtpcpp (0.4.13-1) buster; urgency=medium

  * fixed issue #37

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 19 Nov 2020 09:16:34 +0100

xtpcpp (0.4.12-1) buster; urgency=medium

  * new features added by Thomas Renne

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 18 Nov 2020 16:21:03 +0100

xtpcpp (0.4.11-1) buster; urgency=medium

  * new tandemrun wrapper

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 18 Nov 2020 14:15:58 +0100

xtpcpp (0.4.10-1) buster; urgency=medium

  * new CondorProcess API

  * new MassChroQ GUI to execute MassChroQ

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 17 Nov 2020 14:22:16 +0100

xtpcpp (0.4.9-2) UNRELEASED; urgency=low

  * Changed the maintainer to debichem team as the code is now
    in https://salsa.debian.org/debichem-team/xtpcpp.

  * Add Thomas Renne as Copyright holder for GPL3+ code in 2019,2020.

  * Add the corresponding VCS fields (see above).

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 09 Nov 2020 20:55:49 +0100

xtpcpp (0.4.9-1) unstable; urgency=low

  * First package to be uploaded to NEW.

  * Some additions by Filippo Rusconi, like d/u/metadata or d/s/format.

  * Standards-Version: 4.5.0, no changes required.

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 06 Nov 2020 12:21:05 +0100

xtpcpp (0.4.8-1) buster; urgency=medium

  * fix for issues masschroqml, ptm island view

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 02 Nov 2020 11:10:53 +0100

xtpcpp (0.4.7-1) buster; urgency=medium

  * deep refactoring concerning msrun statistics

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 15 Oct 2020 16:48:37 +0200

xtpcpp (0.4.6-1) buster; urgency=medium

  * mfg support for timsdata temporarily removed
  * more checks tandemwrapper run

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 09 Oct 2020 16:07:27 +0200

xtpcpp (0.4.5-1) buster; urgency=medium

  * alginment GUI stuff
  * timstof support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 08 Oct 2020 11:35:20 +0200

xtpcpp (0.4.4-6) buster; urgency=medium

  * new fix for issue #31

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 01 Oct 2020 10:07:36 +0200

xtpcpp (0.4.4-5) buster; urgency=medium

  * new point mutation notation feature fix #32

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 29 Sep 2020 16:24:05 +0200

xtpcpp (0.4.4-4) buster; urgency=medium

  * fix for issue #31

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 28 Sep 2020 10:20:55 +0200

xtpcpp (0.4.4-3) buster; urgency=medium

  * new package to fix issue #31

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 24 Sep 2020 16:05:03 +0200

xtpcpp (0.4.4-2) buster; urgency=medium

  * new package to fix issue #31

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 24 Sep 2020 15:20:04 +0200

xtpcpp (0.4.4-1) buster; urgency=medium

  * maximum number of file reached, test for issue #31

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 24 Sep 2020 13:21:31 +0200

xtpcpp (0.4.3-1) buster; urgency=medium

  * fix for issue #28 : new column in PTM tables and exports to count spectra bearing modifications

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 16 Sep 2020 10:55:19 +0200

xtpcpp (0.4.2-1) buster; urgency=medium

  * fix for issue #26 : bug in compar specific unique sequence sheet

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 02 Sep 2020 09:14:53 +0200

xtpcpp (0.4.1-1) buster; urgency=medium

  * better PTM support
  * no tims preset required
  * boost not needed
  * loss of mzIdentML support
  * export chemical formula in masschroqML output

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 22 Jul 2020 16:53:04 +0200

xtpcpp (0.4.0-2) buster; urgency=medium

  * display all digits of XIC areas

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 08 Jun 2020 17:59:22 +0200

xtpcpp (0.4.0-1) buster; urgency=medium

  * fixed issue #23

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 29 May 2020 16:58:10 +0200

xtpcpp (0.3.9-2) buster; urgency=medium

  * fix issue #22
  * no more dependency with libpwiz and libboost

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 28 May 2020 09:46:44 +0200

xtpcpp (0.3.9-1) buster; urgency=medium

  * lots of improvements made by Thomas Renne

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 May 2020 16:25:15 +0200

xtpcpp (0.3.8-1) unreleased; urgency=low

  * New upstream version. Packaging tweaks.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 04 May 2020 11:37:03 +0200

xtpcpp (0.3.7-3) buster; urgency=medium

  * no console in windows version
  * pseudo centroid for tandem wrapper

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 20 Apr 2020 08:31:29 +0200

xtpcpp (0.3.7-2) buster; urgency=medium

  * important fix in lib PAPPSOms++

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 12 Apr 2020 17:14:51 +0200

xtpcpp (0.3.7-1) buster; urgency=medium

  * allow column move (peptide list, protein list, ptm list, ptm peptide list)
  * edition of centroid parameters in tandem settings for tims tof reader
  * defining alignment groups
  * cross compilation with MXE

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 10 Apr 2020 22:05:08 +0200

xtpcpp (0.3.6-1) buster; urgency=medium

  * timstof support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 04 Mar 2020 16:59:21 +0100

xtpcpp (0.3.5-1ubuntu1) bionic; urgency=medium

  * tandem error messages

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 10 Feb 2020 10:58:19 +0100

xtpcpp (0.3.4-1) buster; urgency=medium

  * several issues fixed by Thomas Renne
  * mascot dat parser work

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 29 Jan 2020 10:22:48 +0100

xtpcpp (0.3.3-1) buster; urgency=medium

  * new spreadsheet output for PSMs

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 14 Jan 2020 10:33:42 +0100

xtpcpp (0.3.2-2ubuntu1) bionic; urgency=medium

  * ubuntu 18.04 package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 10 Jan 2020 22:39:39 +0000

xtpcpp (0.3.2-2) buster; urgency=medium

  * new pappsoms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 08 Jan 2020 22:22:40 +0100

xtpcpp (0.3.2-1) buster; urgency=medium

  * better ms run identification view
  * prapagation of the project name

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 06 Jan 2020 11:26:14 +0100

xtpcpp (0.3.1-3) buster; urgency=medium

  * bunch of little bug fix

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 20 Dec 2019 14:21:34 +0100

xtpcpp (0.3.1-2) buster; urgency=medium

  * merge of latest changes from forge mia

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 19 Dec 2019 22:34:59 +0100

xtpcpp (0.3.1-1) buster; urgency=medium

  * new features coded by Thomas Renne
  * new msrun list windows
  * instant msrun statistics
  * many GUI  fix

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 19 Dec 2019 22:26:05 +0100

xtpcpp (0.2.40-2) buster; urgency=medium

  * buster package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 12 Sep 2019 20:25:49 +0200

xtpcpp (0.2.40-1) stretch; urgency=medium

  * find spectrum directly by index if scan numbers are not supported
  * MassChroqML output without peptide labels in comments
  * new UI to choose removal contaminant mode
  * new FDR computation : decoy/target
  * FDR driven peptide theshold, available for Tandem and Mascot results

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 12 Sep 2019 09:10:45 +0200

xtpcpp (0.2.38-4) stretch; urgency=medium

  * scoring, pluggable scoring added

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 18 Jun 2019 13:37:52 +0200

xtpcpp (0.2.38-3) stretch; urgency=medium

  * refine, maximum missed cleavage sites added

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 18 Jun 2019 13:28:02 +0200

xtpcpp (0.2.38-2) stretch; urgency=medium

  * protein, use minimal annotation parameter added

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 18 Jun 2019 11:43:37 +0200

xtpcpp (0.2.38-1) stretch; urgency=medium

  * new button to look for the best MS run to use as reference in alignment
  * accepts to run TPP modified version of X!Tandem, using specific parameters
  (DIA requirements)
  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 17 Jun 2019 13:53:16 +0200

xtpcpp (0.2.37-2) stretch; urgency=medium

  * sum/max extraction bug fixed, thanks to Marlène and Thierry

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 28 May 2019 16:06:10 +0200

xtpcpp (0.2.37-1) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 24 May 2019 11:53:47 +0200

xtpcpp (0.2.36-1) stretch; urgency=medium

  * proticdbml fix
  * new tandem.exe setup control
  * better error message for tandem run process

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 16 Apr 2019 15:03:10 +0200

xtpcpp (0.2.35-2) stretch; urgency=medium

  * fix libodsstream problem

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 25 Mar 2019 11:27:19 +0100

xtpcpp (0.2.35-1) stretch; urgency=medium

  * mutation support
  * peprepro filter

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 25 Mar 2019 10:46:03 +0100

xtpcpp (0.2.34-2) stretch; urgency=medium

  * fix filename bug

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 Mar 2019 08:53:24 +0100

xtpcpp (0.2.34-1) stretch; urgency=medium

  * fix ppm range in MassChroqML export (thanks to Thierry Balliau)
  * new features asked by Plateforme Post-génomique de la Pitié Salpétrière - P3S
  (Solenne Chardonnet, Cédric Pionneau)
  * write protein list view as is in ODS file
  * write peptide list view as is in ODS file
  * new ui menu in peptide and protein list wiew
  * ppm delta added in ODS spectra sheet export
  * display Nter and Cter peptide flanking regions in ODS and list views

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 18 Mar 2019 11:06:11 +0100

xtpcpp (0.2.33-1) stretch; urgency=medium

  * scroll area for small screens
  * xic extraction method (sum or max)
  * resilient ODS on failure
  * global settings windows
  * xic extractor reader choice

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 25 Feb 2019 13:29:57 +0100

xtpcpp (0.2.32-1) stretch; urgency=medium

  * moving to refactored PAPPSOms++ library
  * bug fixed in FASTA exports

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 06 Feb 2019 11:48:02 +0100

xtpcpp (0.2.31-2) stretch; urgency=medium

  * user agent created, variable to disable htpp get version

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 01 Feb 2019 14:36:56 +0100

xtpcpp (0.2.31-1) stretch; urgency=medium

  * new Fasta file exports by groups and subgroups
  * better MassChroqML output : check MS run file paths, set output result files, set alignment/xic exctraction/peak detection parameters

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 28 Jan 2019 15:13:20 +0100

xtpcpp (0.2.30-1) stretch; urgency=medium

  * new ODS spreadsheet dedicated to peptidomic : comparison of the
    number of spectra for each peptide in each sample

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 14 Jan 2019 10:43:00 +0100

xtpcpp (0.2.29-4) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 08 Jan 2019 16:19:34 +0100

xtpcpp (0.2.29-3) stretch; urgency=medium

  * new pappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 02 Jan 2019 21:52:00 +0100

xtpcpp (0.2.29-1) stretch; urgency=medium

  * modification to be qcustomplot 2.0.1 compliant
  * accept labeling method containing an empty label

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 15 Dec 2018 16:51:44 +0100

xtpcpp (0.2.28-3) stretch; urgency=medium

  * mascot takes all query candidates
  * fix thread wait loading spectrum

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 07 Dec 2018 10:44:46 +0100

xtpcpp (0.2.28-2) stretch; urgency=medium

  * take only first spectrum psm in mascot parser

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 27 Nov 2018 09:21:43 +0100

xtpcpp (0.2.28-1) stretch; urgency=medium

  * improved mascot dat parser
  * ability to choose TSV as export file format
  * icon added for Windows
  * more checks on tandem binary path
  * dependency added on package tandem-mass

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 26 Nov 2018 15:29:21 +0100

xtpcpp (0.2.27-1) stretch; urgency=medium

  * look for sequence LI

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 13 Nov 2018 14:58:53 +0100

xtpcpp (0.2.26-1) stretch; urgency=medium

  * display distinctively the FDR on peptides and on PSM

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 09 Nov 2018 10:50:11 +0100

xtpcpp (0.2.25-2) stretch; urgency=medium

  * new version number 0.2.25

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 02 Nov 2018 15:31:01 +0100

xtpcpp (0.2.25-1) stretch; urgency=medium

  * mascot parser fix for single fasta file
  * protein mass including alanine
  * X!Tandem version check
  * FDR written as percentage in ODS files
  * compute peptide FDR directly on peptides (no protein validation)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 02 Nov 2018 14:26:19 +0100

xtpcpp (0.2.24-3) stretch; urgency=medium

  * fix for temporary directory under condor

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 29 Oct 2018 11:14:33 +0100

xtpcpp (0.2.24-2) stretch; urgency=medium

  * ODS output fix

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 19 Oct 2018 16:57:33 +0200

xtpcpp (0.2.24-1) stretch; urgency=medium

  * new compar ODS output dedicated to labeled experiments
  * SEVERE bug fix concerning protein Evalue computation (reported by T. Balliau)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 19 Oct 2018 16:13:10 +0200

xtpcpp (0.2.23-2) stretch; urgency=medium

  * fix version number

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 16 Oct 2018 11:13:36 +0200

xtpcpp (0.2.23-1) stretch; urgency=medium

  * checking tandem.exe installation
  * new controls to select decoy sequences and avoid bug signaled by C. Henry and T. Balliau
  * new temporary folder handler for HTCondor jobs

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 16 Oct 2018 10:57:47 +0200

xtpcpp (0.2.22-3) stretch; urgency=medium

  * major mzIdentML improvements for MS-GF+

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 03 Oct 2018 22:32:56 +0200

xtpcpp (0.2.22-2) stretch; urgency=medium

  * minor fix

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 03 Oct 2018 11:08:30 +0200

xtpcpp (0.2.22-1) stretch; urgency=medium

  * better Mascot parser
  * new placeholder for contaminant widget
  * refresh evalue when choosing threshold
  * display contaminant checkbox in protein view
  * release MSrun after reading

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 02 Oct 2018 13:56:06 +0200

xtpcpp (0.2.21-4) stretch; urgency=medium

  * make sure that we look for MSrun in the right place

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 03 Sep 2018 16:29:47 +0200

xtpcpp (0.2.21-3) stretch; urgency=medium

  * smart file path guess

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 31 Aug 2018 11:49:39 +0200

xtpcpp (0.2.21-2) stretch; urgency=medium

  * gui text fix (proteins => peptides)
  * find readable msRun file

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 29 Aug 2018 09:26:21 +0200

xtpcpp (0.2.21-1) stretch; urgency=medium

  * ODS column consistency checked, more auto documentation

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 17 Aug 2018 13:51:19 +0200

xtpcpp (0.2.20-1) stretch; urgency=medium

  * TIC columns added in ODS report

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 13 Jul 2018 09:31:03 +0200

xtpcpp (0.2.19-1) stretch; urgency=medium

  * fix in mzidentml reader and pepxml reader to be able to load files
    from MSfragger

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 09 Jul 2018 13:36:40 +0200

xtpcpp (0.2.18-1) stretch; urgency=medium

  * pepxml support
  * XPIP change : each peptide is related has is own identification engine id
  * better xic extractor cache by msrun
  * possibility to display specific identification engine attributes (omssa, comet,msgf+...)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 05 Jul 2018 13:50:31 +0200

xtpcpp (0.2.17-1) stretch; urgency=medium

  * new window to edit detection parameters
  * new PAPPSO library API to
    read MS run files

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 02 Jun 2018 18:09:53 +0200

xtpcpp (0.2.16-3) stretch; urgency=medium

  * fix masschroq out put msrun reference

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 26 May 2018 07:05:21 +0200

xtpcpp (0.2.16-2) stretch; urgency=medium

  * falling back to simple pwiz xic extractor

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 26 May 2018 06:47:15 +0200

xtpcpp (0.2.16-1) stretch; urgency=medium

  * new buffered XIC extractor

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 25 May 2018 09:08:47 +0200

xtpcpp (0.2.15-2) stretch; urgency=medium

  * lib pappsomspp change

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 17 May 2018 22:18:27 +0200

xtpcpp (0.2.15-1) stretch; urgency=medium

  * new xic extractor API, spectral count export fallback, compar bug
    fixed

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 16 May 2018 11:36:53 +0200

xtpcpp (0.2.14-2) stretch; urgency=medium

  * avoid libodsstream bug in compar sheets

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 14 May 2018 13:01:39 +0200

xtpcpp (0.2.14-1) stretch; urgency=medium

  * NSAF compar export

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 04 May 2018 09:14:35 +0200

xtpcpp (0.2.13-1) stretch; urgency=medium

  * XIC peak borders

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 16 Apr 2018 13:34:17 +0200

xtpcpp (0.2.12-2) stretch; urgency=medium

  * ppm delta bug fix

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 28 Mar 2018 10:55:01 +0200

xtpcpp (0.2.12-1) stretch; urgency=medium

  * GUI improvements

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 26 Mar 2018 16:14:42 +0200

xtpcpp (0.2.11-1) stretch; urgency=medium

  * MASCOT dat parser
  * contaminant widget

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 13 Mar 2018 16:01:10 +0100

xtpcpp (0.2.10-4) stretch; urgency=medium

  * bug fix when no peak has been detected for a peptide

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 14 Feb 2018 10:20:28 +0100

xtpcpp (0.2.10-3) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 12 Feb 2018 16:45:57 +0100

xtpcpp (0.2.10-2) stretch; urgency=medium

  * fix library package name

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 11 Feb 2018 18:08:26 +0100

xtpcpp (0.2.10-1) stretch; urgency=medium

  * better UI and XIC viewer

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 11 Feb 2018 08:02:37 +0100

xtpcpp (0.2.9-2) stretch; urgency=medium

  * extract XIC in other MS runs

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 29 Jan 2018 09:53:12 +0100

xtpcpp (0.2.8-1) stretch; urgency=medium

  * better PTM island mode

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 25 Jan 2018 10:06:17 +0100

xtpcpp (0.2.7-1) stretch; urgency=medium

  * bug fixed on long protein label with reversed sequences

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 23 Jan 2018 15:57:47 +0100

xtpcpp (0.2.6-1) stretch; urgency=medium

  * new XIC viewer

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 18 Jan 2018 16:28:07 +0100

xtpcpp (0.2.5-2) stretch; urgency=medium

  * disable warning message in xpip export

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 10 Jan 2018 16:19:17 +0100

xtpcpp (0.2.5-1) stretch; urgency=medium

  * search on msrun and scan, better individual mode, better widgets

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 10 Jan 2018 14:50:52 +0100

xtpcpp (0.2.4-1) stretch; urgency=medium

  * new peptide widget

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 03 Jan 2018 11:44:36 +0100

xtpcpp (0.2.3-2) stretch; urgency=medium

  * new mass delta, new FDR, new histogram

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 20 Dec 2017 11:20:52 +0100

xtpcpp (0.2.3-1) stretch; urgency=medium

  * better FDR and mass delta computing

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 17 Dec 2017 18:19:11 +0100

xtpcpp (0.2.2-2) stretch; urgency=medium

  * new pappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 15 Dec 2017 11:38:38 +0100

xtpcpp (0.2.2-1) stretch; urgency=medium

  * better xpip format input and output

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 04 Dec 2017 10:54:31 +0100

xtpcpp (0.2.1-1) stretch; urgency=medium

  * huge refactoring
  * new xpip output file
  * clear mz file list in tandem run dialog

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 22 Nov 2017 15:56:02 +0100

xtpcpp (0.1.23-1) stretch; urgency=medium

  * better ODS and XPIP file
  * compute mass and number of tryptic
    peptides on non regular protein sequences

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 15 Nov 2017 12:57:36 +0100

xtpcpp (0.1.22-2) stretch; urgency=medium

  * HTCondor parameter edition

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 06 Nov 2017 08:44:17 +0100

xtpcpp (0.1.22-1) stretch; urgency=medium

  * new buttons in central widget
  * xpip file creation
  * tandem parameters added
  * avoid non amino acid chars in tryptic peptide count

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 27 Oct 2017 16:40:50 +0200

xtpcpp (0.1.21-1) stretch; urgency=medium

  * tandem file check
  * better tandem form
  * multiple directory upload
  * monitoring grouping (and faster grouping)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 21 Oct 2017 11:58:51 +0200

xtpcpp (0.1.20-2) stretch; urgency=medium

  * tandem parameter form hardened

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 15 Oct 2017 20:32:27 +0200

xtpcpp (0.1.20-1) stretch; urgency=medium

  * tandem parameters editor

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 15 Oct 2017 07:50:50 +0200

xtpcpp (0.1.19-1) stretch; urgency=medium

  * new preset window (for tandem parameters)
  * divizion by zero fixed and exception added

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 09 Oct 2017 09:03:30 +0200

xtpcpp (0.1.18-1) stretch; urgency=medium

  * MS run and identification statistics

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 26 Sep 2017 10:07:10 +0200

xtpcpp (0.1.17-2) stretch; urgency=medium

  * fix desktop file

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 22 Sep 2017 15:42:11 +0200

xtpcpp (0.1.17-1) stretch; urgency=medium

  * better tandem run dialog box
  * success message after tandem run (thanks T. Balliau)
  * condor/tmp_dir_autoremove parameter to keep log files
  * choose number of threads for tandem run
  * XPIP mime type associated to xtpcpp

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 22 Sep 2017 14:36:15 +0200

xtpcpp (0.1.16-1) stretch; urgency=medium

  * qt5 switch
  * about dialog window
  * Tandem run window (local and HTCondor)

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 18 Sep 2017 12:07:33 +0200

xtpcpp (0.1.15-1) stretch; urgency=medium

  * ptm peptide list

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 17 Aug 2017 15:40:53 +0200

xtpcpp (0.1.14-2) stretch; urgency=medium

  * utf8 pwiz library bug workaround

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 01 Jul 2017 10:37:11 +0200

xtpcpp (0.1.14-1) stretch; urgency=medium

  * mzidentml and pepxml support

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 24 Jun 2017 22:43:53 +0200

xtpcpp (0.1.13-1) jessie; urgency=medium

  * progress bar, now spectral count output

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 12 Jun 2017 08:59:00 +0200

xtpcpp (0.1.12-1) jessie; urgency=medium

  * first PTM island support

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 31 May 2017 10:51:11 +0200

xtpcpp (0.1.11-2) jessie; urgency=medium

  * new odsstream library

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 23 May 2017 23:09:30 +0200

xtpcpp (0.1.11-1) jessie; urgency=medium

  * proticdbml output

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Sat, 20 May 2017 17:36:09 +0200

xtpcpp (0.1.10-1) jessie; urgency=medium

  * trick to read MGF files

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 12 May 2017 10:26:42 +0200

xtpcpp (0.1.9-1) jessie; urgency=medium

  * MGF peak sorting, waiting dialog, new ODS sheets (samples, groups)

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 09 May 2017 11:30:23 +0200

xtpcpp (0.1.8-1) jessie; urgency=medium

  * better peptide viewer

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 05 May 2017 16:28:16 +0200

xtpcpp (0.1.7-1) jessie; urgency=medium

  * button to link with peptide viewer

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 04 May 2017 14:47:48 +0200

xtpcpp (0.1.6-1) jessie; urgency=medium

  * new ODS sheet in outputs

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 03 May 2017 10:28:25 +0200

xtpcpp (0.1.5-2) jessie; urgency=medium

  * new export options

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 28 Apr 2017 10:30:20 +0200

xtpcpp (0.1.5-1) jessie; urgency=medium

  * new export options

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 28 Apr 2017 10:18:20 +0200

xtpcpp (0.1.4-1) jessie; urgency=medium

  * FASTA export

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 27 Apr 2017 09:19:11 +0200

xtpcpp (0.1.3-1) jessie; urgency=medium

  * thanks Ariane and Thierry

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 25 Apr 2017 16:22:04 +0200

xtpcpp (0.1.2-1) jessie; urgency=medium

  * new modification editor, new FDR mass deviation behaviour, lots of
    improvements

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 24 Apr 2017 10:17:53 +0200

xtpcpp (0.1.1-1) jessie; urgency=medium

  * bug fix and new features

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 20 Apr 2017 11:32:40 +0200

xtpcpp (0.1.0-1) jessie; urgency=medium

  * first jessie package

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 19 Apr 2017 10:15:33 +0200

xtpcpp (0.1.0-1~stretch) stretch; urgency=medium

  * first package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 18 Apr 2017 20:55:14 +0200
