grouping-protein (0.5.11-1) trixie; urgency=medium

  * Trixie package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 05 Jan 2026 17:07:37 +0100

grouping-protein (0.5.10-1) bookworm; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 07 May 2025 11:45:46 +0200

grouping-protein (0.5.9-1) bookworm; urgency=medium

  * gp-read-diann read DIANN results as input
  * gp-output-masschroq builds MassChroQ3 json output

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 10 Mar 2025 14:09:48 +0100

grouping-protein (0.5.8-1) bookworm; urgency=medium

  * C++ 20
  * using std::set instead of QStringList for speed

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 26 Jan 2025 17:01:49 +0100

grouping-protein (0.5.7-1) bookworm; urgency=medium

  * new binary to create a fasta file using protein accessions from peptide xml result file

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 23 Jan 2025 16:26:14 +0100

grouping-protein (0.5.6-1) bookworm; urgency=medium

  * source tree reorganisation

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 Nov 2024 09:30:06 +0100

grouping-protein (0.5.5-9) bullseye; urgency=medium

  * qt6 switch

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 04 May 2023 09:03:56 +0200

grouping-protein (0.5.5-8) bullseye; urgency=medium

  * syntax update for bullseye

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 14 Feb 2022 10:37:54 +0100

grouping-protein (0.5.4-1) bullseye; urgency=medium

  * bullseye package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 29 Jan 2022 11:44:33 +0100

grouping-protein (0.5.3-1) buster; urgency=medium

  * add gp-output-proticdbml to install list

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 20 Oct 2021 17:33:20 +0200

grouping-protein (0.5.2-10) buster; urgency=medium

  * new libpappsoms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 23 Jul 2020 13:37:18 +0200

grouping-protein (0.5.2-9) buster; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 19 May 2020 16:44:17 +0200

grouping-protein (0.5.2-8) buster; urgency=medium

  * new libpappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 18 May 2020 11:05:49 +0200

grouping-protein (0.5.2-7) buster; urgency=medium

  * new libpappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 20 Apr 2020 16:06:54 +0200

grouping-protein (0.5.2-6) buster; urgency=medium

  * important fix in lib PAPPSOms++

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 12 Apr 2020 18:24:29 +0200

grouping-protein (0.5.2-5) buster; urgency=medium

  * new lib PAPPSOms++

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 11 Apr 2020 11:22:06 +0200

grouping-protein (0.5.2-4) buster; urgency=medium

  * new pappsoms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 08 Jan 2020 22:05:24 +0100

grouping-protein (0.5.2-3) buster; urgency=medium

  * new libpappspmspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 20 Dec 2019 09:29:48 +0100

grouping-protein (0.5.2-2) buster; urgency=medium

  * buster package

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 12 Sep 2019 20:43:47 +0200

grouping-protein (0.5.2-1) stretch; urgency=medium

  * replacement of python buggy script gp-fdr-peptide by c++ binary

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 12 Sep 2019 09:22:30 +0200

grouping-protein (0.5.1-1) stretch; urgency=medium

  * more secure FDR estimation

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 09 Sep 2019 19:01:59 +0200

grouping-protein (0.5.0-1) stretch; urgency=medium

  * new FDR filter feature

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 09 Sep 2019 11:41:28 +0200

grouping-protein (0.4.10-14) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 17 Jun 2019 10:54:46 +0200

grouping-protein (0.4.10-13) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 24 May 2019 12:04:07 +0200

grouping-protein (0.4.10-12) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 25 Mar 2019 10:55:36 +0100

grouping-protein (0.4.10-11) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 06 Feb 2019 10:53:43 +0100

grouping-protein (0.4.10-10) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 09 Jan 2019 10:48:54 +0100

grouping-protein (0.4.10-9) stretch; urgency=medium

  * new PAPPSO C++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 03 Jan 2019 14:51:35 +0100

grouping-protein (0.4.10-7) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 17 Aug 2018 15:01:38 +0200

grouping-protein (0.4.10-6) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 02 Jun 2018 18:00:20 +0200

grouping-protein (0.4.10-5) stretch; urgency=medium

  * new libpappsomspp

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 25 May 2018 10:28:35 +0200

grouping-protein (0.4.10-4) stretch; urgency=medium

  * lib pappsomspp change

 -- Olivier Langella <olivier.langella@u-psud.fr>  Thu, 17 May 2018 22:13:15 +0200

grouping-protein (0.4.10-3) stretch; urgency=medium

  * new pappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 16 May 2018 13:06:36 +0200

grouping-protein (0.4.10-2) stretch; urgency=medium

  * older cmake compatibility

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 16 Apr 2018 13:41:41 +0200

grouping-protein (0.4.10-1) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 12 Feb 2018 13:33:58 +0100

grouping-protein (0.4.9-1) stretch; urgency=medium

  * using QCommandLineParser

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 23 Jan 2018 17:43:36 +0100

grouping-protein (0.4.8-1) stretch; urgency=medium

  * decoy sequences not removed by default, parsing bug fixed on decoy
    pattern argument

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 19 Jan 2018 16:46:34 +0100

grouping-protein (0.4.7-6) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 19 Jan 2018 10:33:20 +0100

grouping-protein (0.4.7-5) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 10 Jan 2018 15:39:09 +0100

grouping-protein (0.4.7-4) stretch; urgency=medium

  * new PAPPSOms++ library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Wed, 03 Jan 2018 12:57:51 +0100

grouping-protein (0.4.7-3) stretch; urgency=medium

  * new pappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sun, 17 Dec 2017 14:19:11 +0100

grouping-protein (0.4.7-2) stretch; urgency=medium

  * new pappsomspp library

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 15 Dec 2017 11:47:32 +0100

grouping-protein (0.4.7-1) stretch; urgency=medium

  * new monitoring system, code refactoring

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 11 Dec 2017 16:34:28 +0100

grouping-protein (0.4.6-3) stretch; urgency=medium

  * new version

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 08 Dec 2017 15:14:06 +0100

grouping-protein (0.4.6-2) stretch; urgency=medium

  * display warning if different masses, better error handlers

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 08 Dec 2017 15:03:32 +0100

grouping-protein (0.4.6-1) stretch; urgency=medium

  * only count peptides and proteins option

 -- Olivier Langella <olivier.langella@u-psud.fr>  Fri, 08 Dec 2017 13:12:56 +0100

grouping-protein (0.4.5-1) stretch; urgency=medium

  * compute peptide theoretical mh from sequence and modifications

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 05 Dec 2017 14:17:35 +0100

grouping-protein (0.4.4-3) stretch; urgency=medium

  * take only one digit no round

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 05 Dec 2017 10:46:30 +0100

grouping-protein (0.4.4-2) stretch; urgency=medium

  * round before with 3 digits

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 04 Dec 2017 17:03:19 +0100

grouping-protein (0.4.4-1) stretch; urgency=medium

  * use 2 digits and round to merge peptides

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 04 Dec 2017 12:00:25 +0100

grouping-protein (0.4.3-4) stretch; urgency=medium

  * change package dependencies

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 23 Oct 2017 19:10:02 +0200

grouping-protein (0.4.3-3) stretch; urgency=medium

  * new libpappsomspp

 -- Olivier Langella <olivier.langella@u-psud.fr>  Sat, 21 Oct 2017 17:18:23 +0200

grouping-protein (0.4.3-2) stretch; urgency=medium

  * new PAPPSOms++ API

 -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 18 Sep 2017 11:43:32 +0200

grouping-protein (0.4.3-1) stretch; urgency=medium

  * 2 digit mass reference

 -- Olivier Langella <olivier.langella@u-psud.fr>  Tue, 27 Jun 2017 10:48:55 +0200

grouping-protein (0.4.2-1) jessie; urgency=medium

  * bug 11207 fixed

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 09 May 2017 13:48:51 +0200

grouping-protein (0.4.1-1) jessie; urgency=medium

  * new decoy regexp argument

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Wed, 03 May 2017 10:23:31 +0200

grouping-protein (0.4.0-1) jessie; urgency=medium

  * grouping protein now uses pappsomspp library

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 27 Apr 2017 15:43:05 +0200

grouping-protein (0.3.2-1) jessie; urgency=medium

  * circumvent X\!Tandem bug
  * recognizes peptide/mh with 2 digits

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Tue, 12 Apr 2016 15:22:04 +0200

grouping-protein (0.3.1-1) jessie; urgency=medium

  * handler for X\!Tandem point mutations

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Dec 2015 09:58:14 +0100

grouping-protein (0.2.2-1) jessie; urgency=medium

  * write new XML element psimod in the masschroqml files

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 27 Nov 2015 09:48:58 +0100

grouping-protein (0.2.1-11) jessie; urgency=medium

  * package for Jessie

 -- Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 28 Aug 2015 15:41:52 +0200

grouping-protein (0.2.1-10) wheezy; urgency=low

  * sg removal now choses the largest peptide first 

 -- langella <Olivier.Langella@moulon.inra.fr>  Tue, 26 Aug 2014 10:08:23 +0200

grouping-protein (0.2.1-9) wheezy; urgency=low

  * better sg removal algo

 -- langella <Olivier.Langella@moulon.inra.fr>  Fri, 18 Jul 2014 09:13:55 +0200

grouping-protein (0.2.1-8) wheezy; urgency=low

  * better output results writing

 -- langella <Olivier.Langella@moulon.inra.fr>  Wed, 16 Jul 2014 12:17:41 +0200

grouping-protein (0.2.1-7) wheezy; urgency=low

  * no non informative subgroup removal option added

 -- langella <Olivier.Langella@moulon.inra.fr>  Wed, 11 Jun 2014 10:14:39 +0200

grouping-protein (0.2.1-6) wheezy; urgency=low

  * it seems to work at last

 -- langella <Olivier.Langella@moulon.inra.fr>  Mon, 09 Jun 2014 13:51:09 +0200

grouping-protein (0.2.1-5) wheezy; urgency=low

  * better perf on subgroupset

 -- langella <Olivier.Langella@moulon.inra.fr>  Sat, 07 Jun 2014 18:01:17 +0200

grouping-protein (0.2.1-4) wheezy; urgency=low

  * performance issue fixed

 -- langella <Olivier.Langella@moulon.inra.fr>  Sat, 07 Jun 2014 10:56:06 +0200

grouping-protein (0.2.1-3) wheezy; urgency=low

  * testing release : new bug fix

 -- langella <Olivier.Langella@moulon.inra.fr>  Fri, 06 Jun 2014 17:28:54 +0200

grouping-protein (0.2.1-2) wheezy; urgency=low

  * new fasta grouping algorithm, many bug fix

 -- langella <Olivier.Langella@moulon.inra.fr>  Thu, 05 Jun 2014 09:43:47 +0200

grouping-protein (0.2.1-1) wheezy; urgency=low

  * new package for version 0.2.1

 -- langella <Olivier.Langella@moulon.inra.fr>  Fri, 16 May 2014 16:35:11 +0200

grouping-protein (0.1.1-8) wheezy; urgency=low

  * grouping and subgrouping mixed

 -- langella <Olivier.Langella@moulon.inra.fr>  Sat, 26 Apr 2014 16:13:14 +0200

grouping-protein (0.1.1-7) wheezy; urgency=low

  * subgroup size limit changed

 -- langella <Olivier.Langella@moulon.inra.fr>  Sat, 26 Apr 2014 13:29:21 +0200

grouping-protein (0.1.1-6) wheezy; urgency=low

  * new subgrouping algo in fasta grouper

 -- langella <Olivier.Langella@moulon.inra.fr>  Sat, 26 Apr 2014 12:21:29 +0200

grouping-protein (0.1.1-5) wheezy; urgency=low

  * progress message during grouping

 -- langella <Olivier.Langella@moulon.inra.fr>  Sat, 26 Apr 2014 07:53:37 +0200

grouping-protein (0.1.1-4) wheezy; urgency=low

  * error onPsm fixed reading xtandem result files

 -- langella <Olivier.Langella@moulon.inra.fr>  Wed, 16 Apr 2014 16:30:16 +0200

grouping-protein (0.1.1-3) wheezy; urgency=low

  * adding dependency to denovopipeline-ng

 -- langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Apr 2014 16:19:13 +0200

grouping-protein (0.1.1-2) wheezy; urgency=low

  * modifying debian files

 -- langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Apr 2014 15:32:48 +0200

grouping-protein (0.1.1-1.1) wheezy; urgency=low

  * Non-maintainer upload.
  * fasta protein grouper added to package

 -- langella <Olivier.Langella@moulon.inra.fr>  Mon, 14 Apr 2014 15:21:20 +0200

grouping-protein (0.1.1-1) wheezy; urgency=low

  * minor typo fixed
  * same version number in every script

 --  Olivier Langella <Olivier.Langella@moulon.inra.fr>  Mon, 16 Sep 2013 09:20:51 +0200

grouping-protein (0.1.0-1) wheezy; urgency=low

  * package for Debian Wheezy

 --  Olivier Langella <Olivier.Langella@moulon.inra.fr>  Fri, 13 Sep 2013 09:20:51 +0200
