Package: cutelee6-qt6 Source: cutelee Version: 6.1.0-5~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1991 Depends: libc6 (>= 2.32), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.1.2), libstdc++6 (>= 11) Multi-Arch: same Homepage: https://github.com/cutelyst/cutelee Priority: optional Section: libs Filename: pool/main/c/cutelee/cutelee6-qt6_6.1.0-5~trixie+1_amd64.deb Size: 472964 SHA256: 357e69a37d3d12aae2ded4fca72da3cf4d90f1e67cfebfc500f863f0063607eb SHA1: aa200f9779353437f61399fb905239a7e769669b MD5sum: 421bb051f2537d8e26279b5fa539f7f1 Description: Templating library for data-containing document generation (runtime files) The goal of Cutelee Templates is to make it easier for application developers to separate the structure of documents from the data they contain, opening the door for theming and advanced generation of other text such as code. . The syntax uses the syntax of the Django template system, and the core design of Django is reused in Cutelee. .

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

. Part of the design of both template systems is that application developers can extend the syntax by implementing their own tags and filters. For details of how to do that, see the API documentation. . This package ships the development files of the libcutelee shared library. Package: grouping-protein Version: 0.5.12-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 973 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.16-1~trixie+1), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), python3-biopython, libpappsomspp-core0 (>= 0.11.16) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/g/grouping-protein/grouping-protein_0.5.12-1_amd64.deb Size: 198636 SHA256: 8f3e0b4301efde3a99ca6197ec9ca1d49d37fdf5799fc72bab616ad6268a2582 SHA1: fe3376f950a018206ec3afb5742417a016cc7594 MD5sum: a287d701d8ad57ca827ad915b74eae5e Description: Proteomics grouping algorithm Grouping-protein implements a fast algorithm that can filter thousands of peptides Package: i2masschroq Version: 1.3.6-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 5253 Depends: tandemng, libodsstream0 (>= 0.9.14), qt6-svg-plugins, cutelee6-qt6 (>= 6.1.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.17-1~trixie+1), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6widgets6 (>= 6.3.0), libqt6xml6 (>= 6.6.0), libstdc++6 (>= 14) Recommends: i2masschroq-tools Breaks: xtpcpp (<< 0.4.54) Replaces: xtpcpp (<< 0.4.54) Provides: xtpcpp (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq_1.3.6-1~trixie1_amd64.deb Size: 1527152 SHA256: ee928dcfa46f6dd32c6a36d6b60e2cfced029bb83b1b2d2185bb45549fd9c712 SHA1: 99360a3fbdbdf8b4353de2ab653299c4813ce065 MD5sum: cc4faee528971eb351ec6d0158c7d336 Description: Successor of X!TandemPipeline The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export Package: i2masschroq-dbgsym Source: i2masschroq Version: 1.3.6-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 41451 Depends: i2masschroq (= 1.3.6-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-dbgsym_1.3.6-1~trixie1_amd64.deb Size: 40331940 SHA256: bd3e9cc49b297ad3b2c4136f7324dc4740c0fbb872a407d4c23ba2e5dd117752 SHA1: b4ac12d67f5f7ac51d07fe78e37ffc1ff1cbaf02 MD5sum: 7ab4fa101acd822f8dc81eaa1f5ac80a Description: debug symbols for i2masschroq Build-Ids: 57b8c00234339d213e8a1bf21d7496e566ae2b72 Package: i2masschroq-tools Source: i2masschroq Version: 1.3.6-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 389 Depends: tandemng, libc6 (>= 2.34), libgcc-s1 (>= 12), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.17-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Breaks: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Replaces: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Provides: xtpcpp-tools (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq-tools_1.3.6-1~trixie1_amd64.deb Size: 117720 SHA256: c936cd8bf20faaa67512f3e3fd11885a75aa405a8e9c9b9d7ce8f7024901d045 SHA1: 7b15643535fb461779c29b95d32e5e3bd70ccb20 MD5sum: 8de64da4abcb62066d82787588292068 Description: X!Tandem-related utilities for timsTOF pro and modern mzML data The programs allow one to perform the following tasks: . - Convert and store a (partial) copy of the initial mass spectrometry data files in the mzXML format that is required by X!Tandem; - Perform the conversion above and run i2masschroq on the obtained data files seamlessly. . This package ships two command line tools that are useful when mass data are available in a format that is not immediately consumable by X!Tandem (like mzML or Bruker timsTOF data). Package: i2masschroq-tools-dbgsym Source: i2masschroq Version: 1.3.6-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2642 Depends: i2masschroq-tools (= 1.3.6-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-tools-dbgsym_1.3.6-1~trixie1_amd64.deb Size: 2561596 SHA256: 700846bbac2f2843c5cca8498742fef465aa58e40f639d8b2dae92ece8529982 SHA1: d5b7bc79b0f4d4788218e94b73f59d2ac30b2620 MD5sum: 7479b7bbce20f64eec9ce5b32b04efd0 Description: debug symbols for i2masschroq-tools Build-Ids: 6d0137f3c3039ddb1d2ddb3d3a564df36b0d6e25 a17230cdca21ff1000ffd163d00d90e5ab82a12b Package: libodsstream-dev Source: libodsstream Version: 0.9.15-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 680 Depends: libodsstream0 (= 0.9.15-1~trixie+1), qt6-base-dev, libqt6core5compat6-dev, zlib1g-dev, libquazip1-qt6-dev Breaks: libodsstream-qt5-dev (<< 0.7.9-1~) Replaces: libodsstream-qt5-dev (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libo/libodsstream/libodsstream-dev_0.9.15-1~trixie+1_amd64.deb Size: 101048 SHA256: fdcf0068f9f690d7952dcac436ee18ec2ae53b611d4b2a80d0b529e78a316242 SHA1: 67c9cc340804e004960c98dd3c2b3b52eab2c555 MD5sum: d4cfa498b05ed7bc9dd7ba8c94c20853 Description: C++ library to read or write ODS files (development files) libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the header files of the library. Package: libodsstream-doc Source: libodsstream Version: 0.9.14-2~bookworm+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 4533 Multi-Arch: foreign Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libo/libodsstream/libodsstream-doc_0.9.14-2~bookworm+1_all.deb Size: 322992 SHA256: 8b5f444d757908336c09910d04c8a52f0912c5f99570950e12eff02fe2e58541 SHA1: e0ccc1deb923505c8626844c33eaca4763c6470e MD5sum: fd64388eb4aefddf740b0a501eaf7639 Description: doxygen documentation of the ODSstream library libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the developer documentation. Package: libodsstream0 Source: libodsstream Version: 0.9.15-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 251 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libquazip1-qt6-1t64 (>= 1.4), libstdc++6 (>= 14) Breaks: libodsstream-qt5-0 (<< 0.7.9-1~) Replaces: libodsstream-qt5-0 (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libo/libodsstream/libodsstream0_0.9.15-1~trixie+1_amd64.deb Size: 77388 SHA256: 23cacf7e17b79da834f0d615d493ad4289d181262662c3cdfdbdab41b253a827 SHA1: ada29f0b2602471ffc81453897e7b1c0296e0196 MD5sum: cf982ad00eb22dc9b683845bd3f40717 Description: C++ library to read or write ODS files libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the shared library. Package: libodsstream0-dbgsym Source: libodsstream Version: 0.9.15-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2460 Depends: libodsstream0 (= 0.9.15-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libo/libodsstream/libodsstream0-dbgsym_0.9.15-1~trixie+1_amd64.deb Size: 2460640 SHA256: 4383cbf68e4a11789979d1aa0aea1fdce0bad7307245909b3faefbf34ac5c75a SHA1: 557495b4fd0eabc66d16626b94fb57bb88bb90ec MD5sum: 4e0b70e6299bdbaaf28e917a09b0f525 Description: debug symbols for libodsstream0 Build-Ids: 4953479a1cb4a57fa0c53f4fa80e641c4a8672cb Package: libpappsomspp-cli Source: libpappsomspp Version: 0.11.17-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 212 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.17-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), libpappsomspp-core0 Recommends: libpappsomspp-doc Replaces: libpappsomspp-cli Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: science Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli_0.11.17-1~trixie+1_amd64.deb Size: 53736 SHA256: 9b06c4ff4304cd30404e4a2b555d16e8603a0aa6d73a8c0dd8901372b91ac303 SHA1: ca6a7dcfd035df1d479248db669331229fc15200 MD5sum: 44bc272d2db7b2d6205b32c55c495836 Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships command line interface programs. Package: libpappsomspp-cli-dbgsym Source: libpappsomspp Version: 0.11.17-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1212 Depends: libpappsomspp-cli (= 0.11.17-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli-dbgsym_0.11.17-1~trixie+1_amd64.deb Size: 1138668 SHA256: ae0b32a956cabf57cc0154a52480cf322bb1578988ae4788611fd4405504499c SHA1: 3dee5a1127120800869bb857e6e5aae27013992b MD5sum: f21cfcaed81a41c0f818a0b795b09648 Description: debug symbols for libpappsomspp-cli Build-Ids: 1146ca2df65a636184ec104a974363158003a2ad 81a530691fd87eb4c1e536fdf06b8c2135d2eedc da8904017d3f412015121c4222a387248353cdad e53d16f3de4fdc753fc6587cc1a59654eef4eaea Package: libpappsomspp-core-dev Source: libpappsomspp Version: 0.11.17-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 12274 Depends: libpappsomspp-core0 (= 0.11.17-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-core-dev_0.11.17-1~trixie+1_amd64.deb Size: 1870464 SHA256: be735ae70a251604fc32eaaf9396173e2868596dbccb08a42c479ce5bd7f2cd0 SHA1: 63cdd718c68d6fe488e33c1c3cec1c02311b0bb7 MD5sum: c060a3acc7b7342cc78b0b5e014a8c68 Description: C++ library to handle mass spectrometry data (development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the non-GUI library. Package: libpappsomspp-core0 Source: libpappsomspp Version: 0.11.17-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4086 Depends: libqt6sql6-sqlite, libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6qml6 (>= 6.6.0), libqt6sql6 (>= 6.8.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp0 Breaks: libpappsomspp0 Replaces: libpappsomspp0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0_0.11.17-1~trixie+1_amd64.deb Size: 1441248 SHA256: 3e6e85196f19c50cb00a5c65bb6c3602290f23055ca0762bfa3e6e0719eb5c3b SHA1: db8b841e2be548eda22ee8897db0953d55f89bc4 MD5sum: 0783face6ac9ce7e984fb48ae2d9cacd Description: C++ library to handle mass spectrometry data (non-GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the non-GUI library. Package: libpappsomspp-core0-dbgsym Source: libpappsomspp Version: 0.11.17-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 35319 Depends: libpappsomspp-core0 (= 0.11.17-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0-dbgsym_0.11.17-1~trixie+1_amd64.deb Size: 35317964 SHA256: c18c1353d9b496f3b78b96e1ad7fa0fd7b642b0b42db84ad1652f1a825bcb0a4 SHA1: 7e05f40aae35b68776298cd0b0014c74ed1d905a MD5sum: 5f013c41ca6d975a32953c623642d526 Description: debug symbols for libpappsomspp-core0 Build-Ids: 64a45c872d454fae6743a5a339e25681733c4c8f Package: libpappsomspp-doc Source: libpappsomspp Version: 0.11.17-1~trixie+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 75879 Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libp/libpappsomspp/libpappsomspp-doc_0.11.17-1~trixie+1_all.deb Size: 4936144 SHA256: d73aee15c6800ebfd8a6fd1ed6bbe0f4d8101996f60e1707726f4dee1bb3f40d SHA1: 2c438a520d9d5031c053cb90cf3626a3366c8205 MD5sum: 6abf9c2c4b50ee2691b35f44646b93d8 Description: C++ library to handle mass spectrometry data (developer documentation) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package contains the developer documentation. Package: libpappsomspp-gui-dev Source: libpappsomspp Version: 0.11.17-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1486 Depends: libpappsomspp-gui0 (= 0.11.17-1~trixie+1), libpappsomspp-core-dev (= 0.11.17-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-widget-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui-dev_0.11.17-1~trixie+1_amd64.deb Size: 191148 SHA256: f573e626fe870a0c98c3ba07d56c1a0a79039fdcf6bdfe645ac590c346867a5f SHA1: 148c429504503f4e337e5cfccd91a042687a9089 MD5sum: d2172c8b6b52cb85b0dc115a0f25dead Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the GUI library. Package: libpappsomspp-gui0 Source: libpappsomspp Version: 0.11.17-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 597 Depends: libpappsomspp-core0 (= 0.11.17-1~trixie+1), libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.32), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6qml6 (>= 6.6.0), libqt6sql6 (>= 6.1.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp-widget0 Breaks: libpappsomspp-widget0 Replaces: libpappsomspp-widget0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0_0.11.17-1~trixie+1_amd64.deb Size: 153452 SHA256: bcbf2930c1014bb8ddc7568a9fa0584c67362a3da64e77aa9b2cccc79f25526e SHA1: 085ae74611b0db9cbf9ca3c442b3b31951b1b444 MD5sum: 315bf63a26e2432e0e36206ea2527da7 Description: C++ library to handle mass spectrometry data (GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the GUI library. Package: libpappsomspp-gui0-dbgsym Source: libpappsomspp Version: 0.11.17-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 5225 Depends: libpappsomspp-gui0 (= 0.11.17-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0-dbgsym_0.11.17-1~trixie+1_amd64.deb Size: 5187704 SHA256: 74e325ee3077cb40522531c6c7f171fb46a5e1e53fb5ed4f5df651327d5257c4 SHA1: ba7f48ab8a5f6ba69afe63b504719fade407f71d MD5sum: 8a99396f9b993519d81e44aa3b8f3883 Description: debug symbols for libpappsomspp-gui0 Build-Ids: 2ef7d11ea9985dd8dbe433605b83d07c6143f5c2 Package: libpwizlite-dev Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 11424 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Replaces: libpwizlite-dev (<< 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libdevel Filename: pool/main/libp/libpwizlite/libpwizlite-dev_3.0.14-2~trixie+1_amd64.deb Size: 1251532 SHA256: e16bd4d2cae300bb1afae8256edefed8d447839fff4873225be3d08a678ecba8 SHA1: b4f49637e463ca56a78fede526e2bc9bd9933fba MD5sum: 9ab5285552d6688e2c8eb5622b8ca56d Description: Library to load mzML/mzXML files (dev files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the development files. Package: libpwizlite3t64 Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4947 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), libstdc++6 (>= 14), zlib1g (>= 1:1.2.0) Breaks: libpwizlite3 (<< 3.0.14-2~trixie+1) Replaces: libpwizlite3, libpwizlite3t64 (<< 3.0.14-2~trixie+1) Provides: libpwizlite3 (= 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libs Filename: pool/main/libp/libpwizlite/libpwizlite3t64_3.0.14-2~trixie+1_amd64.deb Size: 911644 SHA256: 99c1b9bf519d728ae9d8674c378950e4be41be4f7d6384f6a0e82699db02a4d6 SHA1: bb13b1bff17a2d7bf56964dd9f8befccedb65753 MD5sum: 25141c4c56460917c6ff53b937b28918 Description: Library to load mzML/mzXML files (runtime files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the runtime library files. Package: libpwizlite3t64-dbgsym Source: libpwizlite Version: 3.0.14-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 13203 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpwizlite/libpwizlite3t64-dbgsym_3.0.14-2~trixie+1_amd64.deb Size: 12856212 SHA256: e415ac9b6b10db39f8668aa25e3dde825f4a590c5233ae45d022a01fe659d087 SHA1: 959a0a1df60216695ad32eb0d3d015409520a858 MD5sum: d87185dfc3829497fc7becce4894fea7 Description: debug symbols for libpwizlite3t64 Build-Ids: 0c03c058f48bd2496425a8ab8ec2126dc42a3e8c Package: metapappso Version: 0.1.16-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 118 Depends: htcondor, grouping-protein, i2masschroq Homepage: https://forgemia.inra.fr/pappso/metapappso Priority: optional Section: science Filename: pool/main/m/metapappso/metapappso_0.1.16-1_amd64.deb Size: 8488 SHA256: a446536302d47a81f7950153b58607b4bb9c6787beea494de9f6d92e796c3cd8 SHA1: 267ad262cef5a6e227026dc3180feda439b32a7c MD5sum: 84ae6a0cbfa575f3e0032b1edee0b6f2 Description: metapappso scripts Package: ods2tsv Source: libodsstream Version: 0.9.15-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 102 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (= 0.9.15-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: text Filename: pool/main/libo/libodsstream/ods2tsv_0.9.15-1~trixie+1_amd64.deb Size: 23568 SHA256: 1b6aee370919ca36ac75971547d0a6a41ba506b621dbc1a4d10eff3fb476ae50 SHA1: 881a16b40aa0f0e7588cd7624cfffd54fd292953 MD5sum: f9ef4571b29e559e26876ae3582abcf8 Description: ODS to TSV file converter Simple command line interface utility that takes one or more ods files as input and convert them into tabulated separated value (tsv simple text files). Each ods file will create an output directory of the same name, containing all the spreadsheets (one tsv file per spreadsheet). Package: ods2tsv-dbgsym Source: libodsstream Version: 0.9.15-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 545 Depends: ods2tsv (= 0.9.15-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libo/libodsstream/ods2tsv-dbgsym_0.9.15-1~trixie+1_amd64.deb Size: 506156 SHA256: e552073e545037d1c549f505612ede4f387f7d6b6f3ee85c404cb3967aeb545c SHA1: 72d60b009b9606eda8eb54e4e8eb265d0f077c0d MD5sum: 08ae7de9b54edce71e22e425ecc8b19c Description: debug symbols for ods2tsv Build-Ids: 91d89614fdaf5c42d39d310031c7860b851ac1ef e5022964fd09617a734c0d2ed95b9a4fa4baf3a8 Package: pappsoms-tools Version: 0.2.56-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 858 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-core0 (>= 0.10.2), libpappsomspp-gui0 (>= 0.10.2), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14), libpappsomspp-widget0 (>= 0.9.37) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: libs Filename: pool/main/p/pappsoms-tools/pappsoms-tools_0.2.56-1_amd64.deb Size: 175472 SHA256: eaca724edf6d42f5d8b404f8c3d0dee8432e815ecce9afaed57824e834a1c2f1 SHA1: 00e11040a38396b37b21a6bf7ad599bfba29cf2e MD5sum: cd772ffdcb4bfbe173325ebfdb17cbb0 Description: set of proteomic tools used on PAPPSO. computes peptide mass, isotope ratio, fragmentation products, protein grouper. Package: pappsoms-tools-dbgsym Source: pappsoms-tools Version: 0.2.56-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 8672 Depends: pappsoms-tools (= 0.2.56-1) Priority: optional Section: debug Filename: pool/main/p/pappsoms-tools/pappsoms-tools-dbgsym_0.2.56-1_amd64.deb Size: 8448896 SHA256: 6f2c1b27abf5c8e2092bc3010fe86da5f0b159ea4212283a48d7f6c92c578d41 SHA1: 08d9089ffa2dbfcee24595b2f6f6dbf94bafc5cf MD5sum: 0c248342c07c1391f95475545be91c5a Description: debug symbols for pappsoms-tools Build-Ids: 0ac35019e618868dbdd96f5415b833cf02fffb21 10e072d9b1e83e01aee8462a0fadcf21f82bce49 220e0ceef49b9d3abbbc363e6c7fe041eb203295 74af3000d0eadfc6e35e80a1952c45261a078c2a 812e8f1003db642c2ce436e8422709e913df67ce be20c750d689159c73de77574b5e34fac828940e bf283990ab74d1fd7ee71ed6f0e687dfdfffe0f6 c00389c055373718fff242592d93dd7dc1fdbf57 cd34f6ec045d3b059a18f7c77f80f17377048a68 eaa3e96f7baf39fa10492849b46eb8dcea9a813b fa64a5d35c60ac9f677d4404c5e87f11b72a48f1 Package: python3-diacmdbuilder Source: diacmdbuilder Version: 1.0.1-1 Architecture: all Maintainer: PAPPSO Installed-Size: 158 Depends: python3:any, python3, python3-pyqt5 Homepage: https://forge.inrae.fr/pappso/experiment/dia_scripts Priority: optional Section: python Filename: pool/main/d/diacmdbuilder/python3-diacmdbuilder_1.0.1-1_all.deb Size: 32492 SHA256: 289677b654ee6b2122f6bfd4e543c00717835e0a41c6457e0ddb923e42f4b967 SHA1: 9629538971abbd61016ad76c135648a5cfda60dd MD5sum: e362b58060f4966c05c292ffa59edab9 Description: helper to build command line for linux Description longue de votre package Package: specoms Version: 0.0.25-2~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 1006 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-core0 (>= 0.10.2), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14), libpappsomspp-gui0 (>= 0.9.22) Priority: optional Section: science Filename: pool/main/s/specoms/specoms_0.0.25-2~trixie+1_amd64.deb Size: 218452 SHA256: df32f49bb20b694c6251fabaf385c9485ce2ce004aac3a0a00bea415b6f5fa1f SHA1: 9212bf7416c688281f39c7c1c2bd6b94a28e8519 MD5sum: 0ba7de7cf215e5748e7635a22bef4505 Description: Open Modification Search algorithm for MS/MS peptide identification DeepProt is based on SpecOMS published in David et al. 2017. Package: specoms-dbgsym Source: specoms Version: 0.0.25-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 17613 Depends: specoms (= 0.0.25-2~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specoms/specoms-dbgsym_0.0.25-2~trixie+1_amd64.deb Size: 17644052 SHA256: e8a3ef9ff7a641770fb1f95be93588cb6e95d786ff45b339616bdc594f9236b8 SHA1: 5f30e9aef66cbcda90e0a2c66e93df1bd9d7bc35 MD5sum: c874c8e1df3a02757675adaaf4214f02 Description: debug symbols for specoms Build-Ids: 619e4a0a61dd43ea2866b78fa721d47eaa9afe68 e9b2f6c93ba62fcc4983c2451b5c839db18654bf Package: specpeptidoms Version: 0.0.1-1~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 535 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-core0 (>= 0.10.2), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), libpappsomspp-gui0 (>= 0.9.22) Priority: optional Section: science Filename: pool/main/s/specpeptidoms/specpeptidoms_0.0.1-1~trixie+1_amd64.deb Size: 99364 SHA256: 83cef19354b97c5e3f7b66cdc3bfc2051be08b672ba91030c844e74b7e335d54 SHA1: c40ffd1c342d2ad5bdb9d088b2900258a1b38127 MD5sum: 85c5130864cfa6c772b0363034ed9f41 Description: MS/MS peptide identification directly on protein sequences not requiring tryptic digestion and peptide modeling SpecPeptidOMS is based on the work published in https://pubs.acs.org/doi/10.1021/acs.jproteome.4c00870. Package: specpeptidoms-dbgsym Source: specpeptidoms Version: 0.0.1-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 6192 Depends: specpeptidoms (= 0.0.1-1~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specpeptidoms/specpeptidoms-dbgsym_0.0.1-1~trixie+1_amd64.deb Size: 6016908 SHA256: 5651da3e7eff36ed50617a1043c59699e47b1d34bdc3f0cc17adc84d2c1eb14c SHA1: cd7c9aaadb107e7ff14636b061b630f56fd2a721 MD5sum: 11eabb53bb10e081b49f538ddd464a53 Description: debug symbols for specpeptidoms Build-Ids: 0672e7d2de47324ec7609968eb4eb6dac17bf9bb 31224e5e2174bcc9771eb839e5f042126ce0845e 415c8171b76393673b6c690343177eaf75d079ad 80654304cc45418033bf09368a0f2a950687cd60 9f845a7361b3d2f8c0dff5ed8d69507ebb719bcf bbc8e67bce6c54962f1d545119df0dc68a807767 bf34221197a89f9f615b4db1cf5f1a7797810865 Package: tandemng Version: 0.3.17-2~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2178 Depends: libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.17-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Conflicts: tandemng-mass Homepage: http://www.thegpm.org/TANDEM/ Priority: optional Section: science Filename: pool/main/t/tandemng/tandemng_0.3.17-2~trixie1_amd64.deb Size: 389056 SHA256: 0f81c697644d8e1273d8d2c284ef8731a41c260ae7fa3427fe497814904b594b SHA1: 8269f5d58a25c3c540a6eb8a035978c502b7d98a MD5sum: f344140d9cba790d244fb6892b9bbcc1 Description: mass spectrometry software for protein identification X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification. . This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf. . Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used. Package: tandemng-dbgsym Source: tandemng Version: 0.3.17-2~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 16298 Depends: tandemng (= 0.3.17-2~trixie1) Priority: optional Section: debug Filename: pool/main/t/tandemng/tandemng-dbgsym_0.3.17-2~trixie1_amd64.deb Size: 16072464 SHA256: ffd025503e8e1b4eee1d5192148b0a50e2591b5861c3623ba5d7b3a434c9323f SHA1: 3a714d6fd598eee473759f8f5d7eda318a71ebe3 MD5sum: 29871b44ee8d5940611a985b2510284a Description: debug symbols for tandemng Build-Ids: 54fdef718ab2df52e7d72a08270a2b04fed034eb a9f21c450f5b761516610da8df539ffca44a8247 da6a907ae13e2afec8d406306937f58fa391cf50 Package: xtpcpp Source: i2masschroq Version: 1.3.6-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp_1.3.6-1~trixie1_amd64.deb Size: 16244 SHA256: 70b75c99434a044112a61b457ce041a885eb0fa360b72b904b05b24b4c30bea1 SHA1: 90f68344d813a9a8cb10d0201c463ddd5d643f7f MD5sum: 9665b2583443355109a70b7e21a2e33e Description: Transitional package from xtpcpp to i2masschroq The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time. Package: xtpcpp-tools Source: i2masschroq Version: 1.3.6-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq-tools, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp-tools_1.3.6-1~trixie1_amd64.deb Size: 16256 SHA256: c9b219a2546e1cc5d29d2ab8b69f2d5255c52bb040119f3c57df38e9bebbfd09 SHA1: 50dc886b971389697cc23fdc875cc1f4510c527a MD5sum: 2a3fe0f84da3287749eaefe815b52422 Description: Transitional package from xtpcpp-tools to i2masschroq-tools The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time.