Package: cutelee6-qt6 Source: cutelee Version: 6.1.0-5~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1991 Depends: libc6 (>= 2.32), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.1.2), libstdc++6 (>= 11) Multi-Arch: same Homepage: https://github.com/cutelyst/cutelee Priority: optional Section: libs Filename: pool/main/c/cutelee/cutelee6-qt6_6.1.0-5~trixie+1_amd64.deb Size: 472964 SHA256: 357e69a37d3d12aae2ded4fca72da3cf4d90f1e67cfebfc500f863f0063607eb SHA1: aa200f9779353437f61399fb905239a7e769669b MD5sum: 421bb051f2537d8e26279b5fa539f7f1 Description: Templating library for data-containing document generation (runtime files) The goal of Cutelee Templates is to make it easier for application developers to separate the structure of documents from the data they contain, opening the door for theming and advanced generation of other text such as code. . The syntax uses the syntax of the Django template system, and the core design of Django is reused in Cutelee. .

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

. Part of the design of both template systems is that application developers can extend the syntax by implementing their own tags and filters. For details of how to do that, see the API documentation. . This package ships the development files of the libcutelee shared library. Package: grouping-protein Version: 0.5.12-2 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 974 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.21-1~trixie+1), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), python3-biopython, libpappsomspp-core0 (>= 0.11.16) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/g/grouping-protein/grouping-protein_0.5.12-2_amd64.deb Size: 199036 SHA256: ff9ce3500dddac215d4a65627db901d36820a828b2e1135ac6014607707744ec SHA1: e5b994ed8bd93e7ad54ac4a6c5cdc31e25442573 MD5sum: a5709d7bafa2d1b844eb79957715bf92 Description: Proteomics grouping algorithm Grouping-protein implements a fast algorithm that can filter thousands of peptides Package: i2masschroq Version: 1.3.7-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 5257 Depends: tandemng, libodsstream0 (>= 0.9.14), qt6-svg-plugins, cutelee6-qt6 (>= 6.1.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.21-1~trixie+1), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6widgets6 (>= 6.3.0), libqt6xml6 (>= 6.6.0), libstdc++6 (>= 14) Recommends: i2masschroq-tools Breaks: xtpcpp (<< 0.4.54) Replaces: xtpcpp (<< 0.4.54) Provides: xtpcpp (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq_1.3.7-1~trixie1_amd64.deb Size: 1527752 SHA256: 9fb09a4f7a341744b174628b24b1d1b8a4a9521b1a4006b8c6e5a573a3367ae0 SHA1: 85ccaea52bba1f4f4f649bc400a6fbbdf6ccbed5 MD5sum: eaf9467d1d0969ee997fe323ead912d2 Description: Successor of X!TandemPipeline The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export Package: i2masschroq-dbgsym Source: i2masschroq Version: 1.3.7-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 41569 Depends: i2masschroq (= 1.3.7-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-dbgsym_1.3.7-1~trixie1_amd64.deb Size: 40450728 SHA256: c00b7aa231bb02443e99c49087e73b5c979ad7d7551833ebffb717387d03e1c8 SHA1: ae983a7f59b82c17d7c15741eb7616c2f3f7d007 MD5sum: 3e7efe9e6d3f8f66a175742bba406b3a Description: debug symbols for i2masschroq Build-Ids: f25e5d997f0b94c079cb676f5cf62db4c009a0a9 Package: i2masschroq-tools Source: i2masschroq Version: 1.3.7-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 389 Depends: tandemng, libc6 (>= 2.34), libgcc-s1 (>= 12), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.21-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Breaks: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Replaces: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Provides: xtpcpp-tools (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq-tools_1.3.7-1~trixie1_amd64.deb Size: 118116 SHA256: 2f069f4e84f63699827221c34fb6abf6ee167c58f22eec0c04feea2ddc6c4c29 SHA1: bd4c3115f73d7c03436afd7847ee276a4cd2c283 MD5sum: 432ee018675af446abadf8cacb81d0b1 Description: X!Tandem-related utilities for timsTOF pro and modern mzML data The programs allow one to perform the following tasks: . - Convert and store a (partial) copy of the initial mass spectrometry data files in the mzXML format that is required by X!Tandem; - Perform the conversion above and run i2masschroq on the obtained data files seamlessly. . This package ships two command line tools that are useful when mass data are available in a format that is not immediately consumable by X!Tandem (like mzML or Bruker timsTOF data). Package: i2masschroq-tools-dbgsym Source: i2masschroq Version: 1.3.7-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2642 Depends: i2masschroq-tools (= 1.3.7-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-tools-dbgsym_1.3.7-1~trixie1_amd64.deb Size: 2561616 SHA256: 10e84336ef6a73995128c0dbf1760f6e054ebd1dbf145c95bb475079d29e9e70 SHA1: 0540b962434dc60d6ef4da2808ac768770066937 MD5sum: 7a49b8c93cce964c0410322b8e365529 Description: debug symbols for i2masschroq-tools Build-Ids: 6d0137f3c3039ddb1d2ddb3d3a564df36b0d6e25 a17230cdca21ff1000ffd163d00d90e5ab82a12b Package: libodsstream-dev Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 680 Depends: libodsstream0 (= 0.9.19-1~trixie+1), qt6-base-dev, qt6-5compat-dev, zlib1g-dev, libquazip1-qt6-dev Breaks: libodsstream-qt5-dev (<< 0.7.9-1~) Replaces: libodsstream-qt5-dev (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libo/libodsstream/libodsstream-dev_0.9.19-1~trixie+1_amd64.deb Size: 101212 SHA256: 7cf2f94ab1083f7d5cb92d7113fe185b5781d0e39de975a588bdb924f05fcfdf SHA1: 8fbe997f1fe9978b663b26bf2d6543c99e71c791 MD5sum: cdf6427d17dc7baa5f1b6071d658df3b Description: C++ library to read or write ODS files (development files) libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the header files of the library. Package: libodsstream-doc Source: libodsstream Version: 0.9.14-2~bookworm+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 4533 Multi-Arch: foreign Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libo/libodsstream/libodsstream-doc_0.9.14-2~bookworm+1_all.deb Size: 322992 SHA256: 8b5f444d757908336c09910d04c8a52f0912c5f99570950e12eff02fe2e58541 SHA1: e0ccc1deb923505c8626844c33eaca4763c6470e MD5sum: fd64388eb4aefddf740b0a501eaf7639 Description: doxygen documentation of the ODSstream library libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the developer documentation. Package: libodsstream0 Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 251 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libquazip1-qt6-1t64 (>= 1.4), libstdc++6 (>= 14) Breaks: libodsstream-qt5-0 (<< 0.7.9-1~) Replaces: libodsstream-qt5-0 (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libo/libodsstream/libodsstream0_0.9.19-1~trixie+1_amd64.deb Size: 77628 SHA256: 472efda7769681de18a91ac8f20b4b0335f135fb66256da49c8225d6cbfaa3f9 SHA1: 3b129277d1c6fa9f776e82d4c85c223d20be1d77 MD5sum: 8332cbfc5447ec566073ff384131b99b Description: C++ library to read or write ODS files libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the shared library. Package: libodsstream0-dbgsym Source: libodsstream Version: 0.9.19-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2460 Depends: libodsstream0 (= 0.9.19-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libo/libodsstream/libodsstream0-dbgsym_0.9.19-1~trixie+1_amd64.deb Size: 2460640 SHA256: f697a4c96d3d04b98a5efc40cef6bc190b47c4ed7b49ecfc08c6ad23e926622b SHA1: 8cb804359bf7b6abcee3b53d24855477e774e6fe MD5sum: b59d6b4541add0f74c033a5c6920b184 Description: debug symbols for libodsstream0 Build-Ids: edd182d15b4aa750a27e1459ae87926794ed415b Package: libpappsomspp-cli Source: libpappsomspp Version: 0.11.21-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 212 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.21-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), libpappsomspp-core0 Recommends: libpappsomspp-doc Replaces: libpappsomspp-cli Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: science Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli_0.11.21-1~trixie+1_amd64.deb Size: 54160 SHA256: 5a1426323a890406a4b87f372ebe306953e1a69778e0965d2dbe797d0e75c92a SHA1: 6d657971fe2e2389f68d681650fbf364cc25a407 MD5sum: 3f612e152840960648daffda9415d0f0 Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships command line interface programs. Package: libpappsomspp-cli-dbgsym Source: libpappsomspp Version: 0.11.21-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1212 Depends: libpappsomspp-cli (= 0.11.21-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli-dbgsym_0.11.21-1~trixie+1_amd64.deb Size: 1138720 SHA256: 64770074837447764c29a070f02ba4393316618a5f94aedadcd0bdc9cb8f5eda SHA1: c544eecbcfd121540e4cb04ee1381cf28d7e3ed0 MD5sum: 62058156e0137f2ffe233383964c73f6 Description: debug symbols for libpappsomspp-cli Build-Ids: 0e1a62ea67894e6095f9c931c6461a995362878e 7c838d5bfc18c6168d653e891424d068182fda90 b784a5a90f30ceca4988bdb98a9d1abf53b716ad f88079ba107218ae8484124889368620aca518de Package: libpappsomspp-core-dev Source: libpappsomspp Version: 0.11.21-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 12274 Depends: libpappsomspp-core0 (= 0.11.21-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-core-dev_0.11.21-1~trixie+1_amd64.deb Size: 1871536 SHA256: 7afbaadeb460dcba1b0518040c6ca18a27fcae408117f8c2b9f60adc7ca40b6b SHA1: 0635bf0a2c91d47610cb92ecbdfa5783c79c24bd MD5sum: 45b68190fb444ac8bc3d2ac8a29ae8d9 Description: C++ library to handle mass spectrometry data (development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the non-GUI library. Package: libpappsomspp-core0 Source: libpappsomspp Version: 0.11.21-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4086 Depends: libqt6sql6-sqlite, libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6qml6 (>= 6.6.0), libqt6sql6 (>= 6.8.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp0 Breaks: libpappsomspp0 Replaces: libpappsomspp0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0_0.11.21-1~trixie+1_amd64.deb Size: 1443808 SHA256: 9d3b914e327dbc9d2ad24a3c49b5e3c9861a984d1eea6d7a7d7b4c281f2d1ba2 SHA1: 115bfeee28177434d80fe1fa785da5df33301664 MD5sum: fdb72ddbbbffa8632dfd547b78cba8b1 Description: C++ library to handle mass spectrometry data (non-GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the non-GUI library. Package: libpappsomspp-core0-dbgsym Source: libpappsomspp Version: 0.11.21-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 35309 Depends: libpappsomspp-core0 (= 0.11.21-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0-dbgsym_0.11.21-1~trixie+1_amd64.deb Size: 35307028 SHA256: 3aee67f3cc24ad0d44cc0bfe9317278ab928ee0caf0710ad5f2dad1f5885d447 SHA1: def2fea6ca2dcfbc63ae71d3a48a90d8bb3c7f06 MD5sum: e5a21e6ee2891942227a921b472b91b7 Description: debug symbols for libpappsomspp-core0 Build-Ids: 42bdce41aab70683247c8921765d67ec594cfa2f Package: libpappsomspp-doc Source: libpappsomspp Version: 0.11.21-1~trixie+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 75882 Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libp/libpappsomspp/libpappsomspp-doc_0.11.21-1~trixie+1_all.deb Size: 4936080 SHA256: 577e6cc987c1b173605c9de8adb15ec86acbd8a8dc82f8e3604ee5abc2146c29 SHA1: 619ee286b9241102116172c5777ecd0e7e7fb497 MD5sum: 154923864ccffd0852ec00443fb37c95 Description: C++ library to handle mass spectrometry data (developer documentation) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package contains the developer documentation. Package: libpappsomspp-gui-dev Source: libpappsomspp Version: 0.11.21-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1490 Depends: libpappsomspp-gui0 (= 0.11.21-1~trixie+1), libpappsomspp-core-dev (= 0.11.21-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-widget-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui-dev_0.11.21-1~trixie+1_amd64.deb Size: 192208 SHA256: f7a819864b56c097650cce5ee0adcea805831fccd693325bf0a62c49bc43dd00 SHA1: 0aa87c260087309f4a1e5a101a7616d35e83af25 MD5sum: 074e932ac5d35ab0fda549b2ef726bcf Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the GUI library. Package: libpappsomspp-gui0 Source: libpappsomspp Version: 0.11.21-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 597 Depends: libpappsomspp-core0 (= 0.11.21-1~trixie+1), libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.32), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6qml6 (>= 6.6.0), libqt6sql6 (>= 6.1.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp-widget0 Breaks: libpappsomspp-widget0 Replaces: libpappsomspp-widget0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0_0.11.21-1~trixie+1_amd64.deb Size: 154692 SHA256: 8ae3ed488534f94e0e2f9dd4fd9cacf1a87db89c87cd9b69e699ece0c6dd160d SHA1: 5597c9372bc5181ae30fa1d946589ae079a96660 MD5sum: 2aed05d79608a6d955753aa31eb81b09 Description: C++ library to handle mass spectrometry data (GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the GUI library. Package: libpappsomspp-gui0-dbgsym Source: libpappsomspp Version: 0.11.21-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 5233 Depends: libpappsomspp-gui0 (= 0.11.21-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0-dbgsym_0.11.21-1~trixie+1_amd64.deb Size: 5194756 SHA256: bd24f487525d3b099efd3930ada5fd65ec3d681e9158eec12edc98974e19d4e1 SHA1: ac9a7595bdb416b0c285f4f6b045e5cc75abc8a7 MD5sum: 8007e6418a63bb695c84a0c63d6d8264 Description: debug symbols for libpappsomspp-gui0 Build-Ids: f02d47a40682f808bf721d194795b1bec27182b8 Package: libpwizlite-dev Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 11424 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Replaces: libpwizlite-dev (<< 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libdevel Filename: pool/main/libp/libpwizlite/libpwizlite-dev_3.0.14-2~trixie+1_amd64.deb Size: 1251532 SHA256: e16bd4d2cae300bb1afae8256edefed8d447839fff4873225be3d08a678ecba8 SHA1: b4f49637e463ca56a78fede526e2bc9bd9933fba MD5sum: 9ab5285552d6688e2c8eb5622b8ca56d Description: Library to load mzML/mzXML files (dev files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the development files. Package: libpwizlite3t64 Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4947 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), libstdc++6 (>= 14), zlib1g (>= 1:1.2.0) Breaks: libpwizlite3 (<< 3.0.14-2~trixie+1) Replaces: libpwizlite3, libpwizlite3t64 (<< 3.0.14-2~trixie+1) Provides: libpwizlite3 (= 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libs Filename: pool/main/libp/libpwizlite/libpwizlite3t64_3.0.14-2~trixie+1_amd64.deb Size: 911644 SHA256: 99c1b9bf519d728ae9d8674c378950e4be41be4f7d6384f6a0e82699db02a4d6 SHA1: bb13b1bff17a2d7bf56964dd9f8befccedb65753 MD5sum: 25141c4c56460917c6ff53b937b28918 Description: Library to load mzML/mzXML files (runtime files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the runtime library files. Package: libpwizlite3t64-dbgsym Source: libpwizlite Version: 3.0.14-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 13203 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpwizlite/libpwizlite3t64-dbgsym_3.0.14-2~trixie+1_amd64.deb Size: 12856212 SHA256: e415ac9b6b10db39f8668aa25e3dde825f4a590c5233ae45d022a01fe659d087 SHA1: 959a0a1df60216695ad32eb0d3d015409520a858 MD5sum: d87185dfc3829497fc7becce4894fea7 Description: debug symbols for libpwizlite3t64 Build-Ids: 0c03c058f48bd2496425a8ab8ec2126dc42a3e8c Package: metapappso Version: 0.1.16-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 118 Depends: htcondor, grouping-protein, i2masschroq Homepage: https://forgemia.inra.fr/pappso/metapappso Priority: optional Section: science Filename: pool/main/m/metapappso/metapappso_0.1.16-1_amd64.deb Size: 8488 SHA256: a446536302d47a81f7950153b58607b4bb9c6787beea494de9f6d92e796c3cd8 SHA1: 267ad262cef5a6e227026dc3180feda439b32a7c MD5sum: 84ae6a0cbfa575f3e0032b1edee0b6f2 Description: metapappso scripts Package: ods2tsv Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 102 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (= 0.9.19-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: text Filename: pool/main/libo/libodsstream/ods2tsv_0.9.19-1~trixie+1_amd64.deb Size: 23780 SHA256: c8461c885bc44371560d24d6588594f91be399609f15abee32b414079fea636d SHA1: 49f3e836c7fb4a05bbb9381feabdab1a2366f634 MD5sum: cfa02dab5a75e1054857508ad291ab9f Description: ODS to TSV file converter Simple command line interface utility that takes one or more ods files as input and convert them into tabulated separated value (tsv simple text files). Each ods file will create an output directory of the same name, containing all the spreadsheets (one tsv file per spreadsheet). Package: ods2tsv-dbgsym Source: libodsstream Version: 0.9.19-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 545 Depends: ods2tsv (= 0.9.19-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libo/libodsstream/ods2tsv-dbgsym_0.9.19-1~trixie+1_amd64.deb Size: 506460 SHA256: 1c1381c397165b13b6629917734f7e104f19b8e9b424d3f969c0805845c1b3b8 SHA1: edb83091e35d6f3bd3f4865a32cef73e36c6ac3a MD5sum: 9b99a506a7669a880182daa24d502506 Description: debug symbols for ods2tsv Build-Ids: 039bbefb9cbd86067d4d18b1ff1f9dcaae076f11 1c9d9c4d6b171b0f23ca129fb2d2a7f60d0fd333 Package: pappsoms-tools Version: 0.2.57-3 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 934 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.21-1~trixie+1), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: libs Filename: pool/main/p/pappsoms-tools/pappsoms-tools_0.2.57-3_amd64.deb Size: 190112 SHA256: b28910e5362ebb346a7ae16dcb289eeaedc211a381c8730d97d9acc4d4c2df82 SHA1: ffb26137ec1a87cb8ed7d922b3e2bb5ba1c949c5 MD5sum: 1816ebc0960f962eac4f199f547d16e8 Description: set of proteomic tools used on PAPPSO. computes peptide mass, isotope ratio, fragmentation products, protein grouper. Package: pappsoms-tools-dbgsym Source: pappsoms-tools Version: 0.2.57-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 9607 Depends: pappsoms-tools (= 0.2.57-3) Priority: optional Section: debug Filename: pool/main/p/pappsoms-tools/pappsoms-tools-dbgsym_0.2.57-3_amd64.deb Size: 9366520 SHA256: a56dcdf0ca8de8d52b3f712721bcb407b7a78e9b1a8540a169575456c24e31ea SHA1: de5ddab3514d5df91083c18e3073da2f591e3843 MD5sum: 80962f1e5dbaa3d06c89db78776e319d Description: debug symbols for pappsoms-tools Build-Ids: 2337c42f9bc7c5ee0a5551bfce67969ef9b24b9c 41f565ed112ac598128b4467a91d561ad75ba4c6 5aab5f4935912ddb68232362d74e408e76b9599f 6080fbb69b6c6b69e8bd3b3c7bbb34d350701cda 6cd2c1808f802c9479212a2c57ca471932694acb 8ae93e8dc12be74aa1d7f5250c0a6d309b985e49 b5f855827929245e4714d2bcdb82ea434c2bf469 c2071c5973c7fefb84f4401122853903bd9e9459 dbc3b6eb6d5687944a82d9a84faff7f1eb45c2d6 dc38495d848f1eca626bc3586c1fee87fc4262ff f217d14a5afc78c9be4a1846c5bd05f3cfdd99b3 f79822a9c5f0a3697a49b81d5ce085eccf1f6335 Package: python3-diacmdbuilder Source: diacmdbuilder Version: 1.0.1-1 Architecture: all Maintainer: PAPPSO Installed-Size: 158 Depends: python3:any, python3, python3-pyqt5 Homepage: https://forge.inrae.fr/pappso/experiment/dia_scripts Priority: optional Section: python Filename: pool/main/d/diacmdbuilder/python3-diacmdbuilder_1.0.1-1_all.deb Size: 32492 SHA256: 289677b654ee6b2122f6bfd4e543c00717835e0a41c6457e0ddb923e42f4b967 SHA1: 9629538971abbd61016ad76c135648a5cfda60dd MD5sum: e362b58060f4966c05c292ffa59edab9 Description: helper to build command line for linux Description longue de votre package Package: specoms Version: 0.0.25-2~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 1006 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-core0 (>= 0.10.2), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14), libpappsomspp-gui0 (>= 0.9.22) Priority: optional Section: science Filename: pool/main/s/specoms/specoms_0.0.25-2~trixie+1_amd64.deb Size: 218452 SHA256: df32f49bb20b694c6251fabaf385c9485ce2ce004aac3a0a00bea415b6f5fa1f SHA1: 9212bf7416c688281f39c7c1c2bd6b94a28e8519 MD5sum: 0ba7de7cf215e5748e7635a22bef4505 Description: Open Modification Search algorithm for MS/MS peptide identification DeepProt is based on SpecOMS published in David et al. 2017. Package: specoms-dbgsym Source: specoms Version: 0.0.25-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 17613 Depends: specoms (= 0.0.25-2~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specoms/specoms-dbgsym_0.0.25-2~trixie+1_amd64.deb Size: 17644052 SHA256: e8a3ef9ff7a641770fb1f95be93588cb6e95d786ff45b339616bdc594f9236b8 SHA1: 5f30e9aef66cbcda90e0a2c66e93df1bd9d7bc35 MD5sum: c874c8e1df3a02757675adaaf4214f02 Description: debug symbols for specoms Build-Ids: 619e4a0a61dd43ea2866b78fa721d47eaa9afe68 e9b2f6c93ba62fcc4983c2451b5c839db18654bf Package: specpeptidoms Version: 0.0.2-1~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 884 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.17-1~trixie+1), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Priority: optional Section: science Filename: pool/main/s/specpeptidoms/specpeptidoms_0.0.2-1~trixie+1_amd64.deb Size: 179908 SHA256: ae5e1a60fb1d2dfe885e132d974be91332eed9954b441d89d0a164e7b21e8a5b SHA1: 28467352f8f9e808d93349fe210b2fa48e3318a5 MD5sum: 53f1e760eb729b2c82ca1b86c1dfd2b7 Description: MS/MS peptide identification directly on protein sequences not requiring tryptic digestion and peptide modeling SpecPeptidOMS is based on the work published in https://pubs.acs.org/doi/10.1021/acs.jproteome.4c00870. Package: specpeptidoms-dbgsym Source: specpeptidoms Version: 0.0.2-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 9412 Depends: specpeptidoms (= 0.0.2-1~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specpeptidoms/specpeptidoms-dbgsym_0.0.2-1~trixie+1_amd64.deb Size: 9070752 SHA256: e5ed72b9cadfc1cd205df1d65089b5c1e200b9864fa60d835d220f47b695b554 SHA1: 8f0cb2527aa95ab1aecf94ce8738d55698cc7380 MD5sum: 2c9f06814dbc6dc5f83215c49b727133 Description: debug symbols for specpeptidoms Build-Ids: 0b725dac8c0365db339fb8355bdd51ef02308856 39d8d9c68506df5de7939dcca676b81607f34153 564ccaeed527dedd675dd4ae34c2c3969a28b346 a4fb1a9c650ee49848a0d9a42248116fe5648664 b46d7d84c34227dc729cd6dc400a2a9223378d26 bc3fb670bef09c447b8b706e37acd7479fe3c474 dc621e444f65aff5e92b768635b5ea07ce70cb28 e92e66ec73dc77c71db2bd0bcfbe6f048d8a9f43 fbc53778a53619e3a19f56bfb3a571a34735b0eb Package: tandemng Version: 0.3.17-3~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2178 Depends: libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.21-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Conflicts: tandemng-mass Homepage: http://www.thegpm.org/TANDEM/ Priority: optional Section: science Filename: pool/main/t/tandemng/tandemng_0.3.17-3~trixie1_amd64.deb Size: 389256 SHA256: 333e9e8c98106743304909661d3c7279f3168e74c12b1bec7e6bff34af5eb9ec SHA1: 3f1a7348d91481056465dbc152f1ff0a2fe6d3aa MD5sum: 96d054306df4047159df9c0aa5e1ee0f Description: mass spectrometry software for protein identification X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification. . This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf. . Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used. Package: tandemng-dbgsym Source: tandemng Version: 0.3.17-3~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 16298 Depends: tandemng (= 0.3.17-3~trixie1) Priority: optional Section: debug Filename: pool/main/t/tandemng/tandemng-dbgsym_0.3.17-3~trixie1_amd64.deb Size: 16072476 SHA256: a97dcc1653842067f02e2d7edcbbc6be20b1c8887cecc97ed9b8f06a27f314c0 SHA1: 63a408558c3279e59d5ea1bf3086823f406876f9 MD5sum: bbcbe1ad3a3754e94ff66e748ab242bf Description: debug symbols for tandemng Build-Ids: 54fdef718ab2df52e7d72a08270a2b04fed034eb a9f21c450f5b761516610da8df539ffca44a8247 da6a907ae13e2afec8d406306937f58fa391cf50 Package: xtpcpp Source: i2masschroq Version: 1.3.7-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp_1.3.7-1~trixie1_amd64.deb Size: 16428 SHA256: 33503cb8a73b0750d6ff96ffe62f7047bcef1210d7f64cd3fd7b8078106d138b SHA1: e41076ffa048beee735f3d1d25689b6c5e5e68a5 MD5sum: 5ffba80bf799f86e732534273858e7df Description: Transitional package from xtpcpp to i2masschroq The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time. Package: xtpcpp-tools Source: i2masschroq Version: 1.3.7-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq-tools, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp-tools_1.3.7-1~trixie1_amd64.deb Size: 16436 SHA256: 101079cbce5c11c7b38b858f21286825221a339b716442ad51d9619365205687 SHA1: e73ad3463ead13d679551e4f83639b44b83d9c60 MD5sum: f752d273f5d6af493a0dfaec7687d032 Description: Transitional package from xtpcpp-tools to i2masschroq-tools The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time.