Package: cutelee6-qt6 Source: cutelee Version: 6.1.0-5~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1991 Depends: libc6 (>= 2.32), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.1.2), libstdc++6 (>= 11) Multi-Arch: same Homepage: https://github.com/cutelyst/cutelee Priority: optional Section: libs Filename: pool/main/c/cutelee/cutelee6-qt6_6.1.0-5~trixie+1_amd64.deb Size: 472964 SHA256: 357e69a37d3d12aae2ded4fca72da3cf4d90f1e67cfebfc500f863f0063607eb SHA1: aa200f9779353437f61399fb905239a7e769669b MD5sum: 421bb051f2537d8e26279b5fa539f7f1 Description: Templating library for data-containing document generation (runtime files) The goal of Cutelee Templates is to make it easier for application developers to separate the structure of documents from the data they contain, opening the door for theming and advanced generation of other text such as code. . The syntax uses the syntax of the Django template system, and the core design of Django is reused in Cutelee. .

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

. Part of the design of both template systems is that application developers can extend the syntax by implementing their own tags and filters. For details of how to do that, see the API documentation. . This package ships the development files of the libcutelee shared library. Package: grouping-protein Version: 0.6.0-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 687 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.28-1~trixie+1), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), python3-pygroupingprotein, libpappsomspp-core0 (>= 0.11.16) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/g/grouping-protein/grouping-protein_0.6.0-1_amd64.deb Size: 156340 SHA256: 8b0c55f62d90d4662c76a1403a601bb41a11badb3f0825842e46057dd4f35d35 SHA1: 7171f3f7ec36bb2c2c3dd6c20e7343ba0e0e9a52 MD5sum: d460f97478029e54c34540b340180246 Description: Proteomics grouping algorithm Grouping-protein implements a fast algorithm that can filter thousands of peptides Package: i2masschroq Version: 1.3.9-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 5257 Depends: tandemng, libodsstream0 (>= 0.9.14), qt6-svg-plugins, cutelee6-qt6 (>= 6.1.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.28-1~trixie+1), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6widgets6 (>= 6.3.0), libqt6xml6 (>= 6.6.0), libstdc++6 (>= 14) Recommends: i2masschroq-tools Breaks: xtpcpp (<< 0.4.54) Replaces: xtpcpp (<< 0.4.54) Provides: xtpcpp (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq_1.3.9-1~trixie1_amd64.deb Size: 1527688 SHA256: 9522fe945da0e24c8c74811151415e7f53abe5b533ed037728fd3fc7387c9966 SHA1: c83810086e60ae87f5efe26c736248d83e157703 MD5sum: ced8cc98a0fc87d6d44fe08bcb0eb5f7 Description: Successor of X!TandemPipeline The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export Package: i2masschroq-dbgsym Source: i2masschroq Version: 1.3.9-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 41578 Depends: i2masschroq (= 1.3.9-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-dbgsym_1.3.9-1~trixie1_amd64.deb Size: 40456564 SHA256: 9e38bf128c28ca874442a5dd4ced18a9fab0e08db366af10935245a0a0093df3 SHA1: 0f531a836c2feae62d7ef8a38ae336a444adbdfd MD5sum: 045d12df13569b890497873a38ca75a3 Description: debug symbols for i2masschroq Build-Ids: 622f291fbb5e3c4d4059023e1dd642d1c8f6dbdf Package: i2masschroq-tools Source: i2masschroq Version: 1.3.9-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 389 Depends: tandemng, libc6 (>= 2.34), libgcc-s1 (>= 12), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.28-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Breaks: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Replaces: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Provides: xtpcpp-tools (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq-tools_1.3.9-1~trixie1_amd64.deb Size: 118192 SHA256: 3a06807cf6952961a5d5391c6f27be1fe79cf5b7a995e66d1a2cdb64df0585f7 SHA1: b80cd8615422dde3ef700e45c9ec17845ced6f50 MD5sum: 54e6b64dab291698be81d87ca2dc7875 Description: X!Tandem-related utilities for timsTOF pro and modern mzML data The programs allow one to perform the following tasks: . - Convert and store a (partial) copy of the initial mass spectrometry data files in the mzXML format that is required by X!Tandem; - Perform the conversion above and run i2masschroq on the obtained data files seamlessly. . This package ships two command line tools that are useful when mass data are available in a format that is not immediately consumable by X!Tandem (like mzML or Bruker timsTOF data). Package: i2masschroq-tools-dbgsym Source: i2masschroq Version: 1.3.9-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2642 Depends: i2masschroq-tools (= 1.3.9-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-tools-dbgsym_1.3.9-1~trixie1_amd64.deb Size: 2561744 SHA256: a5ee0537e9961d746b31e8b587b6f2680bdd560ab2919468ab07e3c4241a3793 SHA1: 99d57238839a1914765d5ed1446f55e74135dfa5 MD5sum: 6cba867b338c394d2429cb4a6aebc2af Description: debug symbols for i2masschroq-tools Build-Ids: 1603b14324bcc39c7e729dc9a9275251f80025c3 da730ac6a0454d430aa7b003b4765e086360c5fd Package: libodsstream-dev Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 680 Depends: libodsstream0 (= 0.9.19-1~trixie+1), qt6-base-dev, qt6-5compat-dev, zlib1g-dev, libquazip1-qt6-dev Breaks: libodsstream-qt5-dev (<< 0.7.9-1~) Replaces: libodsstream-qt5-dev (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libo/libodsstream/libodsstream-dev_0.9.19-1~trixie+1_amd64.deb Size: 101212 SHA256: 7cf2f94ab1083f7d5cb92d7113fe185b5781d0e39de975a588bdb924f05fcfdf SHA1: 8fbe997f1fe9978b663b26bf2d6543c99e71c791 MD5sum: cdf6427d17dc7baa5f1b6071d658df3b Description: C++ library to read or write ODS files (development files) libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the header files of the library. Package: libodsstream-doc Source: libodsstream Version: 0.9.14-2~bookworm+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 4533 Multi-Arch: foreign Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libo/libodsstream/libodsstream-doc_0.9.14-2~bookworm+1_all.deb Size: 322992 SHA256: 8b5f444d757908336c09910d04c8a52f0912c5f99570950e12eff02fe2e58541 SHA1: e0ccc1deb923505c8626844c33eaca4763c6470e MD5sum: fd64388eb4aefddf740b0a501eaf7639 Description: doxygen documentation of the ODSstream library libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the developer documentation. Package: libodsstream0 Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 251 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libquazip1-qt6-1t64 (>= 1.4), libstdc++6 (>= 14) Breaks: libodsstream-qt5-0 (<< 0.7.9-1~) Replaces: libodsstream-qt5-0 (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libo/libodsstream/libodsstream0_0.9.19-1~trixie+1_amd64.deb Size: 77628 SHA256: 472efda7769681de18a91ac8f20b4b0335f135fb66256da49c8225d6cbfaa3f9 SHA1: 3b129277d1c6fa9f776e82d4c85c223d20be1d77 MD5sum: 8332cbfc5447ec566073ff384131b99b Description: C++ library to read or write ODS files libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the shared library. Package: libodsstream0-dbgsym Source: libodsstream Version: 0.9.19-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2460 Depends: libodsstream0 (= 0.9.19-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libo/libodsstream/libodsstream0-dbgsym_0.9.19-1~trixie+1_amd64.deb Size: 2460640 SHA256: f697a4c96d3d04b98a5efc40cef6bc190b47c4ed7b49ecfc08c6ad23e926622b SHA1: 8cb804359bf7b6abcee3b53d24855477e774e6fe MD5sum: b59d6b4541add0f74c033a5c6920b184 Description: debug symbols for libodsstream0 Build-Ids: edd182d15b4aa750a27e1459ae87926794ed415b Package: libpappsomspp-cli Source: libpappsomspp Version: 0.11.28-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 213 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.28-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), libpappsomspp-core0 Recommends: libpappsomspp-doc Replaces: libpappsomspp-cli Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: science Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli_0.11.28-1~trixie+1_amd64.deb Size: 54708 SHA256: 483d77e1f5b377007b79d8bedf339e4a8701c95a94ed2384fd493bde9ad64bda SHA1: 45afeb538065115324f3fc737e24c0a87b741724 MD5sum: ae10bced97f5e3f82b14fcec1df6d5ef Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships command line interface programs. Package: libpappsomspp-cli-dbgsym Source: libpappsomspp Version: 0.11.28-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1212 Depends: libpappsomspp-cli (= 0.11.28-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli-dbgsym_0.11.28-1~trixie+1_amd64.deb Size: 1138556 SHA256: f34f804834c5131a8710889224bb2b2c008930d4c0d94d0cb00452c7261c6edd SHA1: 26e88262d0963beb9a18938953a82c57f58c8d9c MD5sum: 142d1aa462ccade329f226420ca0fadc Description: debug symbols for libpappsomspp-cli Build-Ids: 153c3c2f5085551dc0b0dc60a27fb8d2609d4bc4 26f2fa61f801499f56efff9a6a2cdcb3cfd32c89 77b4946e99632d3d1982a8fec55f66298ff03cec bc71ec8e71b51e9672cfb3552ad556317d4d3c99 Package: libpappsomspp-core-dev Source: libpappsomspp Version: 0.11.28-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 11737 Depends: libpappsomspp-core0 (= 0.11.28-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-core-dev_0.11.28-1~trixie+1_amd64.deb Size: 1819196 SHA256: f08004f6b7265b612c4bff4c2f8fb657f09d2149cd968d407b653cceaec574a8 SHA1: 6fe3ae9c214a4a76fbfe18b153dfb498293b3767 MD5sum: 7c80b235d14ccfad52dc4ce362c9736b Description: C++ library to handle mass spectrometry data (development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the non-GUI library. Package: libpappsomspp-core0 Source: libpappsomspp Version: 0.11.28-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 3928 Depends: libqt6sql6-sqlite, libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6printsupport6 (>= 6.1.2), libqt6sql6 (>= 6.8.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp0 Breaks: libpappsomspp0 Replaces: libpappsomspp0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0_0.11.28-1~trixie+1_amd64.deb Size: 1412012 SHA256: 542f7ae40cd754f28d7a974ecccef64c0acb502919b298ebfdc104a1a3a412b2 SHA1: d304c8a5a47f745b220dc6d32b39438d10e24698 MD5sum: 1dcfcabd536acf52ecb6ef66d944394f Description: C++ library to handle mass spectrometry data (non-GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the non-GUI library. Package: libpappsomspp-core0-dbgsym Source: libpappsomspp Version: 0.11.28-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 33308 Depends: libpappsomspp-core0 (= 0.11.28-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0-dbgsym_0.11.28-1~trixie+1_amd64.deb Size: 33307500 SHA256: 306114e6f1fed815c97a6b68cc1274815464619532d2f7466a587bf26b35b8ba SHA1: 7c25aa997ca2cc7b9869d645118c050238bc54d3 MD5sum: 0d13de7979b532d496385f2f51a08220 Description: debug symbols for libpappsomspp-core0 Build-Ids: a8b00d0ad78bc691088856251e653b8aa66ef4d0 Package: libpappsomspp-doc Source: libpappsomspp Version: 0.11.28-1~trixie+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 75104 Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libp/libpappsomspp/libpappsomspp-doc_0.11.28-1~trixie+1_all.deb Size: 4870100 SHA256: fc6c92478442747a805e8532f56f6e638ff044efa49613f1eed12f3c5d823a04 SHA1: 3211c9a0f42d27c1ff8631586bbaab83d000041d MD5sum: 5fab706ee3ea4c89d04b6e74a8be5ab0 Description: C++ library to handle mass spectrometry data (developer documentation) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package contains the developer documentation. Package: libpappsomspp-gui-dev Source: libpappsomspp Version: 0.11.28-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1277 Depends: libpappsomspp-gui0 (= 0.11.28-1~trixie+1), libpappsomspp-core-dev (= 0.11.28-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-widget-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui-dev_0.11.28-1~trixie+1_amd64.deb Size: 181100 SHA256: 72cd63eee6fd2cadbd1fb31ae2163b796c50737b64facbe406a98323369fed91 SHA1: 76ea5a0ec83fdd84cc35dac647c6b33e3af73b81 MD5sum: f17318062db79980ea4ca743a33708d6 Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the GUI library. Package: libpappsomspp-gui0 Source: libpappsomspp Version: 0.11.28-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 570 Depends: libpappsomspp-core0 (= 0.11.28-1~trixie+1), libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.32), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6printsupport6 (>= 6.1.2), libqt6sql6 (>= 6.1.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp-widget0 Breaks: libpappsomspp-widget0 Replaces: libpappsomspp-widget0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0_0.11.28-1~trixie+1_amd64.deb Size: 150648 SHA256: 2ab152780d26e53d08da8e0d8e4a3b3958a04eb77c4f4b5ba29722c4702e8264 SHA1: bb168d54c5cd0c5cbebf4605934516cd82a74739 MD5sum: 4fff4116808cfc8cbbece45545cd7ba0 Description: C++ library to handle mass spectrometry data (GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the GUI library. Package: libpappsomspp-gui0-dbgsym Source: libpappsomspp Version: 0.11.28-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4978 Depends: libpappsomspp-gui0 (= 0.11.28-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0-dbgsym_0.11.28-1~trixie+1_amd64.deb Size: 4943700 SHA256: 7927964c6e8782b2edf756793770924aa648def61ae44bdb8e8391fd489cf6c2 SHA1: 9944f5a9b4a9262c6d0f248977cc883f9495619c MD5sum: fe88580f6b3fef0d2cc4df1a714324af Description: debug symbols for libpappsomspp-gui0 Build-Ids: 036c2a825ebe4d3460045d0bbdd0c3cb50465016 Package: libpwizlite-dev Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 11424 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Replaces: libpwizlite-dev (<< 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libdevel Filename: pool/main/libp/libpwizlite/libpwizlite-dev_3.0.14-2~trixie+1_amd64.deb Size: 1251532 SHA256: e16bd4d2cae300bb1afae8256edefed8d447839fff4873225be3d08a678ecba8 SHA1: b4f49637e463ca56a78fede526e2bc9bd9933fba MD5sum: 9ab5285552d6688e2c8eb5622b8ca56d Description: Library to load mzML/mzXML files (dev files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the development files. Package: libpwizlite3t64 Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4947 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), libstdc++6 (>= 14), zlib1g (>= 1:1.2.0) Breaks: libpwizlite3 (<< 3.0.14-2~trixie+1) Replaces: libpwizlite3, libpwizlite3t64 (<< 3.0.14-2~trixie+1) Provides: libpwizlite3 (= 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libs Filename: pool/main/libp/libpwizlite/libpwizlite3t64_3.0.14-2~trixie+1_amd64.deb Size: 911644 SHA256: 99c1b9bf519d728ae9d8674c378950e4be41be4f7d6384f6a0e82699db02a4d6 SHA1: bb13b1bff17a2d7bf56964dd9f8befccedb65753 MD5sum: 25141c4c56460917c6ff53b937b28918 Description: Library to load mzML/mzXML files (runtime files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the runtime library files. Package: libpwizlite3t64-dbgsym Source: libpwizlite Version: 3.0.14-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 13203 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpwizlite/libpwizlite3t64-dbgsym_3.0.14-2~trixie+1_amd64.deb Size: 12856212 SHA256: e415ac9b6b10db39f8668aa25e3dde825f4a590c5233ae45d022a01fe659d087 SHA1: 959a0a1df60216695ad32eb0d3d015409520a858 MD5sum: d87185dfc3829497fc7becce4894fea7 Description: debug symbols for libpwizlite3t64 Build-Ids: 0c03c058f48bd2496425a8ab8ec2126dc42a3e8c Package: metapappso Version: 0.1.16-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 118 Depends: htcondor, grouping-protein, i2masschroq Homepage: https://forgemia.inra.fr/pappso/metapappso Priority: optional Section: science Filename: pool/main/m/metapappso/metapappso_0.1.16-1_amd64.deb Size: 8488 SHA256: a446536302d47a81f7950153b58607b4bb9c6787beea494de9f6d92e796c3cd8 SHA1: 267ad262cef5a6e227026dc3180feda439b32a7c MD5sum: 84ae6a0cbfa575f3e0032b1edee0b6f2 Description: metapappso scripts Package: ods2tsv Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 102 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (= 0.9.19-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: text Filename: pool/main/libo/libodsstream/ods2tsv_0.9.19-1~trixie+1_amd64.deb Size: 23780 SHA256: c8461c885bc44371560d24d6588594f91be399609f15abee32b414079fea636d SHA1: 49f3e836c7fb4a05bbb9381feabdab1a2366f634 MD5sum: cfa02dab5a75e1054857508ad291ab9f Description: ODS to TSV file converter Simple command line interface utility that takes one or more ods files as input and convert them into tabulated separated value (tsv simple text files). Each ods file will create an output directory of the same name, containing all the spreadsheets (one tsv file per spreadsheet). Package: ods2tsv-dbgsym Source: libodsstream Version: 0.9.19-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 545 Depends: ods2tsv (= 0.9.19-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libo/libodsstream/ods2tsv-dbgsym_0.9.19-1~trixie+1_amd64.deb Size: 506460 SHA256: 1c1381c397165b13b6629917734f7e104f19b8e9b424d3f969c0805845c1b3b8 SHA1: edb83091e35d6f3bd3f4865a32cef73e36c6ac3a MD5sum: 9b99a506a7669a880182daa24d502506 Description: debug symbols for ods2tsv Build-Ids: 039bbefb9cbd86067d4d18b1ff1f9dcaae076f11 1c9d9c4d6b171b0f23ca129fb2d2a7f60d0fd333 Package: pappsoms-tools Version: 0.2.59-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 974 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.28-1~trixie+1), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: libs Filename: pool/main/p/pappsoms-tools/pappsoms-tools_0.2.59-1_amd64.deb Size: 193928 SHA256: 38f41852fc3201f335666e0d4b898ab9f1a0025e975a258ace31b0992ae33de9 SHA1: 80ee1325302c6f013994014218b639d4f2db3995 MD5sum: 35710cf90cc1da07decf6e9404118411 Description: set of proteomic tools used on PAPPSO. computes peptide mass, isotope ratio, fragmentation products, protein grouper. Package: pappsoms-tools-dbgsym Source: pappsoms-tools Version: 0.2.59-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 10013 Depends: pappsoms-tools (= 0.2.59-1) Priority: optional Section: debug Filename: pool/main/p/pappsoms-tools/pappsoms-tools-dbgsym_0.2.59-1_amd64.deb Size: 9757128 SHA256: 3ded6383b59a3de120a02061786e41be2a5cb05e46ac63120283972125d3a363 SHA1: e9dbcddaa881aa425e00201b4c0076e3845227cc MD5sum: f570eca1dfdc85a30942b26fdfe9475e Description: debug symbols for pappsoms-tools Build-Ids: 0b693696d32d1b55bed42c8a3645af5eabfc654f 1e905cc35d3904f76b40d9ec84991b9df0fcca85 1f3e0c725add04ef4f7a3f6d87d7453d6a5215b1 2aa779655e5ce77f4e52d0cf5356f48d202d6ba8 3bee16f8cabb042190640033ed19febdec8300dd 451b2b6429759203d934539352178e5f236b7594 4df250ee2ac1ceb1a283f7254b2d5169226df08d 597a563647246b0f952261de8ef42ed4f820b360 a0ea7cb58aea44a54fb6781b5f246322321493fb a744959b756bfbac68132df8ea7335dfee157f00 cc9c7f9f2fd2fe957ff5c2009da3f73b29099edd cd095ce5a6559ac26d6a3214cf72fc7449a43bbf d3b02d655387b479d8ae21023750951f67e1bb32 Package: pixi Version: 0.83.0-2 Architecture: amd64 Homepage: https://github.com/prefix-dev/pixi Maintainer: Olivier Langella Installed-Size: 122399 Depends: libbz2-1.0, libc6 (>= 2.39) Priority: optional Section: text Filename: pool/main/p/pixi/pixi_0.83.0-2_amd64.deb Size: 30539924 SHA256: 2f289e5f69b6b3074b31323f2e96f53ad4274ca783ccc5d03980b9e793ffb6af SHA1: f5e8ec3bfc5ce91d1a0cf0c3c9ad66b75f7a31f8 MD5sum: e9916d7d49669b7ce21f3536721893d4 Description: A package management and workflow tool The new foundation for documents. Package: python3-btrfs-backup-ng Source: btrfs-backup-ng Version: 0.10.0-1~trixie Architecture: all Maintainer: Olivier Langella Installed-Size: 2744 Depends: python3-filelock, python3-rich, python3:any Homepage: https://github.com/berrym/btrfs-backup-ng Priority: optional Section: python Filename: pool/main/b/btrfs-backup-ng/python3-btrfs-backup-ng_0.10.0-1~trixie_all.deb Size: 616092 SHA256: c27fb6082b77a1fb4e35efe799af05db49cec80a1cc93720cb4c945e3976e180 SHA1: 63ed8408bfcae63cf320add12043421047ea77de MD5sum: 04a33aea2c56c2236bd780194741dc2d Description: Complete btrfs backup solution with automated snapshots, inc # btrfs-backup-ng . [![CI](https://github.com/berrym/btrfs-backup-ng/actions/workflows/ci.yml/badge.svg)](https://github.com/berrym/btrfs-backup-ng/actions/workflows/ci.yml) [![codecov](https://codecov.io/gh/berrym/btrfs-backup-ng/graph/badge.svg)](https://codecov.io/gh/berrym/btrfs-backup-ng) [![Python 3.11+](https://img.shields.io/badge/python-3.11+-blue.svg)](https://www.python.org/downloads/) [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT) [![Checked with mypy](https://www.mypy-lang.org/static/mypy_badge.svg)](https://mypy-lang.org/) [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) . **btrfs-backup-ng** creates, transfers, prunes, and restores btrfs snapshots — to local disks, over SSH, or as raw stream files on any filesystem — with TOML configuration, incremental transfers, and time-based retention. . ### Project status . Actively developed, pre-1.0, with a strong emphasis on data integrity. Backup and restore across local, SSH, and raw targets are working and have been adversarially tested and verified byte-identical on real hardware. Much of the reliability-and-security hardening roadmap has now shipped — retention correctness and the incremental-backup engine in 0.9.0, Package: python3-cascade-config Source: cascade-config Version: 0.4.0-1pappso Architecture: all Maintainer: Olivier Langella Installed-Size: 43 Depends: python3-jsonschema (>= 3), python3:any Homepage: None Priority: optional Section: python Filename: pool/main/c/cascade-config/python3-cascade-config_0.4.0-1pappso_all.deb Size: 9064 SHA256: 5f646d1493dc747545726984755b9a352e48d65cc944131777199c826f6a5726 SHA1: edfe6e5b07507c91ef2f72a08972d37ba9f5373b MD5sum: cb5d0434e9a59ef7ba9fef9eb2a27811 Description: Cascading configuration from the CLI and config files. # cascade-config . [![](https://flat.badgen.net/pypi/v/cascade-config?icon=pypi)](https://pypi.org/project/cascade-config) [![](https://flat.badgen.net/github/release/ralfg/cascade-config)](https://github.com/ralfg/cascade-config/releases) [![](https://flat.badgen.net/github/checks/ralfg/cascade-config/)](https://github.com/ralfg/cascade-config/actions) [![](https://flat.badgen.net/codecov/c/github/ralfg/cascade-config)](https://codecov.io/gh/RalfG/cascade-config) ![](https://flat.badgen.net/github/last-commit/ralfg/cascade-config) ![](https://flat.badgen.net/github/license/ralfg/cascade-config) . . *Cascading Python configuration from the CLI and multiple config files.* . cascade-config simplifies handling multiple configuration sources, such as config files, command line arguments, or even simple dictionaries. Configuration sources can be added one-by-one and will be parsed in hierarchical order, with each new source updating the existing configuration. . ## Installation . Install with pip ``` Package: python3-cbor2 Source: cbor2 Version: 5.9.0-3~trixie1 Architecture: amd64 Maintainer: Debian Python Team Installed-Size: 256 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3:any, libc6 (>= 2.38) Suggests: python-cbor2-doc Homepage: https://github.com/agronholm/cbor2 Priority: optional Section: python Filename: pool/main/c/cbor2/python3-cbor2_5.9.0-3~trixie1_amd64.deb Size: 61848 SHA256: 6b416cfb55614bd1fd8abc0c10f5c19c285018ae183021d97b85e702a620ce0b SHA1: 2ed4ba03f7b5bf76a77058ba04977b5ff2594878 MD5sum: 63bdfc0c7268c4f6cd88da31a5ccd7d5 Description: Implements Concise Binary Object Representation (Python 3) This library provides encoding and decoding for the Concise Binary Object Representation (CBOR, RFC 7049) serialization format. . Features: * Simple API like json or pickle modules. * Support many CBOR tags with stdlib objects. * Generic tag decoding. * Shared value references including cyclic references. * Optional C module backend tested on big- and little-endian architectures. * Extensible tagged value handling using tag_hook and object_hook on decode and default on encode. * Command-line diagnostic tool, converting CBOR file or stream to JSON (This is a lossy conversion, for diagnostics only) * Thorough test suite. . This package installs the library for Python 3. Package: python3-cbor2-dbgsym Source: cbor2 Version: 5.9.0-3~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Python Team Installed-Size: 168 Depends: python3-cbor2 (= 5.9.0-3~trixie1) Priority: optional Section: debug Filename: pool/main/c/cbor2/python3-cbor2-dbgsym_5.9.0-3~trixie1_amd64.deb Size: 140576 SHA256: 7edb28a672877cf0c29321e5839bd1d377d919b46a1f0d59591ccfa1b8057bd0 SHA1: 249981b163361f0abdfc57664b0289de658b8718 MD5sum: 5996cc8279afc54b8b21c050c3550cdb Description: debug symbols for python3-cbor2 Build-Ids: 4b1cea5233a39d3080a17d2b026dedf2de8a1ef2 Package: python3-diacmdbuilder Source: diacmdbuilder Version: 1.0.1-1 Architecture: all Maintainer: PAPPSO Installed-Size: 158 Depends: python3:any, python3, python3-pyqt5 Homepage: https://forge.inrae.fr/pappso/experiment/dia_scripts Priority: optional Section: python Filename: pool/main/d/diacmdbuilder/python3-diacmdbuilder_1.0.1-1_all.deb Size: 32492 SHA256: 289677b654ee6b2122f6bfd4e543c00717835e0a41c6457e0ddb923e42f4b967 SHA1: 9629538971abbd61016ad76c135648a5cfda60dd MD5sum: e362b58060f4966c05c292ffa59edab9 Description: helper to build command line for linux Description longue de votre package Package: python3-ms2pip Source: ms2pip Version: 4.2.0-1pappso Architecture: all Maintainer: Olivier Langella Installed-Size: 199 Depends: python3-click, python3-lxml, python3-ms2rescore-rs, python3-numpy, python3-pandas, python3-psm-utils, python3-pydantic, python3-pyteomics, python3-rich, python3-sqlalchemy (<< 3), python3-sqlalchemy (>= 1.4), python3-werkzeug, python3-xgboost, python3:any, python3-importlib-resources, python3-psims Homepage: None Priority: optional Section: python Filename: pool/main/m/ms2pip/python3-ms2pip_4.2.0-1pappso_all.deb Size: 43804 SHA256: 053844ddc1c494489ccd2dbccbd7483b56dc06320659fbf96bc96939818aeddd SHA1: 3ccf98bf90a0c27c405fbca5d637f579963b98e6 MD5sum: e3c303fb958a938ef9ab0c32677cfedb Description: MS2PIP: Accurate and versatile peptide fragmentation spectru .. image:: https://github.com/compomics/ms2pip_c/raw/main/img/ms2pip_logo_1000px.png :width: 150px :height: 150px . | . .. image:: https://img.shields.io/github/v/release/compomics/ms2pip_c?include_prereleases&style=flat-square :target: https://github.com/compomics/ms2pip_c/main/latest/ .. image:: https://img.shields.io/pypi/v/ms2pip?style=flat-square :target: https://pypi.org/project/ms2pip/ .. image:: https://img.shields.io/github/actions/workflow/status/compomics/ms2pip_c/test.yml?branch=main&label=tests&style=flat-square :target: https://github.com/compomics/ms2pip_c/actions/workflows/test.yml .. image:: https://img.shields.io/github/actions/workflow/status/compomics/ms2pip_c/build_and_publish.yml?style=flat-square :target: https://github.com/compomics/ms2pip_c/actions/workflows/build_and_publish.yml .. image:: https://img.shields.io/github/issues/compomics/ms2pip_c?style=flat-square :target: https://github.com/compomics/ms2pip_c/issues/ .. image:: https://img.shields.io/github/last-commit/compomics/ms2pip_c?style=flat-square :target: https://github.com/compomics/ms2pip_c/commits/main/ .. image:: https://img.shields.io/github/license/compomics/ms2pip_c?style=flat-square :target: https://www.apache.org/licenses/LICENSE-2.0 Package: python3-ms2rescore-rs Version: 0:0.5.0-1~w2d0 Architecture: amd64 Maintainer: wheel2deb Installed-Size: 296957 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-numpy (>= 1.20), python3:any Priority: optional Section: python Filename: pool/main/p/python3-ms2rescore-rs/python3-ms2rescore-rs_0.5.0-1~w2d0_amd64.deb Size: 37651216 SHA256: b43f20724b670b3922b02ec3cf3b4427e6a78a0283fc8004ea7d628aa70a6555 SHA1: 25d7d90b96fd6344f1c91745b643ea430a5f3905 MD5sum: aa61664feecc1443776c0509621fcd7c Description: ms2rescore rust package This package was generated by wheel2deb v0 Package: python3-narwhals Version: 0:2.28.0-1~w2d0 Architecture: all Maintainer: wheel2deb Installed-Size: 2147 Depends: python3 (>= 3.10~), python3:any Priority: optional Section: python Filename: pool/main/p/python3-narwhals/python3-narwhals_2.28.0-1~w2d0_all.deb Size: 276100 SHA256: 2524f6d78c9563cecabdd26b8f7d17b370e5314e6f272b0650917c72f4abe7bd SHA1: 76e746ad21b55a81297892e5598db3c42b911e41 MD5sum: 8da3831361bf7364b4f0bc545288bab9 Description: Extremely lightweight compatibility layer between dataframe libraries This package was generated by wheel2deb v0 Package: python3-psims Source: psims Version: 1.4.0-6 Architecture: all Maintainer: Olivier Langella Installed-Size: 24360 Depends: python3-lxml, python3-numpy, python3-six, python3-sqlalchemy, python3:any, python3-pytest, python3-h5py Homepage: https://github.com/mobiusklein/psims Priority: optional Section: python Filename: pool/main/p/psims/python3-psims_1.4.0-6_all.deb Size: 23045628 SHA256: 02610e49bdeea10e4f1b65728bdb00185c5a45a2469d7db09adb0b016fb677dd SHA1: b7b8c0a5d712cf41c2c9e53233f1a2444f97a8b2 MD5sum: f9ce824f7d7e3177379cd00f08870c92 Description: Writers and controlled vocabulary manager for PSI-MS's mzML # psims Prototype work for a unified API for writing Proteomics Standards Initiative standardized formats for mass spectrometry: . 1. mzML 2. mzIdentML 3. mzMLb . See the [Documenation](https://mobiusklein.github.io/psims) for more information . ## Installation With pip: ```sh pip install psims ``` . With conda: ```sh conda install -c bioconda -c conda-forge -c defaults psims ``` Package: python3-psm-utils Source: psm-utils Version: 1.5.5-1pappso Architecture: all Maintainer: Olivier Langella Installed-Size: 365 Depends: python3-click, python3-lxml, python3-numpy, python3-pandas, python3-psims, python3-pyarrow, python3-pydantic, python3-pyteomics, python3-rich, python3-sqlalchemy (<< 3), python3-sqlalchemy (>= 2), python3:any Homepage: None Priority: optional Section: python Filename: pool/main/p/psm-utils/python3-psm-utils_1.5.5-1pappso_all.deb Size: 66156 SHA256: 16f076a76e3337040eb2c0c535dbeace8862988b26a7def5b062496c702cc6a3 SHA1: db830b3e92e885968a26279224544f4ab067f870 MD5sum: 012e2d7ff3b87d4fdc120599bb4b0807 Description: Common utilities for parsing and handling peptide-spectrum m ######### psm_utils ######### . Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python. . . .. image:: https://img.shields.io/github/v/release/compomics/psm_utils?sort=semver&style=flat-square :alt: GitHub release :target: https://github.com/compomics/psm_utils/releases . .. image:: https://img.shields.io/pypi/v/psm-utils?style=flat-square :alt: PyPI :target: https://pypi.org/project/psm-utils/ . .. image:: https://img.shields.io/conda/vn/bioconda/psm-utils?style=flat-square :alt: Bioconda :target: http://bioconda.github.io/recipes/psm-utils/README.html Package: python3-pyarrow Version: 0:24.0.0-1~w2d0 Architecture: amd64 Maintainer: wheel2deb Installed-Size: 150841 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3:any Priority: optional Section: python Filename: pool/main/p/python3-pyarrow/python3-pyarrow_24.0.0-1~w2d0_amd64.deb Size: 33544212 SHA256: e3d8903208cea7b6bc3170a318d20533daf298e9d58cce1db0a4b73a4e2e6f0c SHA1: de38c09ab546c465cd57013815c2ea3ff5ebd073 MD5sum: 6b99711e46f6a4e2dd01c8774f07f1cb Description: Python library for Apache Arrow This package was generated by wheel2deb v0 Package: python3-pycborstream Source: pycborstream Version: 0.0.5-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 34 Depends: python3-cbor2 (<< 6.0.0), python3:any, python3-cbor2 (>= 5.9.0) Homepage: None Priority: optional Section: python Filename: pool/main/p/pycborstream/python3-pycborstream_0.0.5-1_all.deb Size: 5724 SHA256: d5ef8c5968dee2774eaea932f09ff5808b0abd3b7da68376c501ff6ae170f00a SHA1: a7ce1724ca6ffa00412ca90d09ed784179ab2ac9 MD5sum: cffa19e222c4e5c61651d83895e41ab1 Description: Stream API using cbor2 to read and write CBOR data. # pycborstream . Simple python API to handle CBOR files as streams. It provides lazy methods to read and write huge CBOR data files saving memory: data can be treated on the fly without having to load the entire structure. . Pycborstream mimics the C++ [QCborStreamReader Class](https://doc.qt.io/qt-6/qcborstreamreader.html) and [QCborStreamWriter Class](https://doc.qt.io/qt-6/qcborstreamwriter.html) API to read and write CBOR data. It uses [cbor2](https://github.com/agronholm/cbor2) under the hood, and combines it to also read/write directly python dictionnaries and arrays. . ## Simple usage: write a CBOR data file . ```python from io import BytesIO . from pycborstream import CborStreamEnc . cbor_out = "data.cbor" with open(cbor_out, "wb") as fp: cbor_encoder = CborStreamEnc(fp) cbor_encoder.startMap(2) # start a map containing 2 key/value pairs cbor_encoder.append("first_key") cbor_encoder.startArray(None) # start an array of undefined length cbor_encoder.append(5) Package: python3-pygroupingprotein Source: pygroupingprotein Version: 0.0.5-1~trixie Architecture: all Maintainer: Olivier Langella Installed-Size: 418 Depends: python3-click, python3-pyarrow, python3-pymasschroqcbor, python3-pymzcbor, python3-pypsmcbor, python3:any, grouping-protein (>= 0.6.0), pappsoms-tools, python3-importlib-resources, python3-biopython, python3-hdf5plugin Homepage: None Priority: optional Section: python Filename: pool/main/p/pygroupingprotein/python3-pygroupingprotein_0.0.5-1~trixie_all.deb Size: 65196 SHA256: 8695546df2fa0b36a99f11237c71b0e16ef4fb1e529545217e802b0eea4e5059 SHA1: 01e0a7ee9ce3761d5419af20a6a1d4c1723eb6e1 MD5sum: 35123ea78b788d1916c4204cbc5c9701 Description: CLI (Command Line Interface) tools to handle proteomics data CLI (Command Line Interface) tools to handle proteomics data Package: python3-pymasschroqcbor Source: pymasschroqcbor Version: 0.0.2-1~trixie Architecture: all Maintainer: Olivier Langella Installed-Size: 48 Depends: python3:any, python3-importlib-resources, python3-pycborstream, python3-typst Homepage: None Priority: optional Section: python Filename: pool/main/p/pymasschroqcbor/python3-pymasschroqcbor_0.0.2-1~trixie_all.deb Size: 6220 SHA256: d722c98cf5c67ca0540d2e8dc0eb5c7cdd8b8844e4c4c609dfe781d73059ab15 SHA1: baadde373ab8d6d715b94c890f420833397572ce MD5sum: 097886a40d27c467bdccc8978d165949 Description: Python package to handle MassChroQ3 CBOR data files. # pymasschroqcbor . python library to handle MassChroQ3 CBOR file format. Extract peak intensities, XIC, isotope pattens... From the MassChroQ CBOR output. Package: python3-pymzcbor Source: pymzcbor Version: 0.0.6-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 106 Depends: python3-importlib-resources, python3-lxml, python3-numpy, python3-psims, python3-pycborstream, python3-pyteomics, python3:any, python3-typst Homepage: None Priority: optional Section: python Filename: pool/main/p/pymzcbor/python3-pymzcbor_0.0.6-1_all.deb Size: 14440 SHA256: 8c65748b26aadc7e7853e851b33e07b8cbd9386948999c451d31f339100b2c45 SHA1: a1b9e12393c4d413b2d9972f6e212b4dd04bf6ed MD5sum: 25f84d27f76401f74f71bdc3152bcde8 Description: Python package to handle mzCBOR/mzML data files Python package to handle mzCBOR/mzML data files Package: python3-pyodsstream Source: pyodsstream Version: 0.0.11-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 230 Depends: python3:any, python3-importlib-resources, python3-colormap, python3-lxml Homepage: None Priority: optional Section: python Filename: pool/main/p/pyodsstream/python3-pyodsstream_0.0.11-1_all.deb Size: 15104 SHA256: 78604ed7aedcc999efb4e5fdc1d967543e0b08d3c0e8a015b51f342f16f13ee5 SHA1: 1d7e5b587316667d9d9a7b37440d93e7a421b1f9 MD5sum: 3a0de6854c27f3241db93523a0541cbe Description: Stream API to read and write Open Document Spreadsheet (ODS) # pyodsstream . Simple python API to handle ODS and tabulated files as streams. It provides lazy methods to read and write Open Document Spreadsheet or TSV files saving memory: data can be treated on the fly without having to load the entire tables. . ## Simple usage: write an ODS file . ```python from pyodsstream import OdsDocWriter . ods_file = "test.ods" with open(ods_file, "wb") as fp: writer = OdsDocWriter(fp) writer.write_sheet("This is a new sheet") writer.write_cell("This is a cell") writer.write_cell(15) writer.write_line() writer.write_cell("This is a cell on the second line") writer.close() ``` Package: python3-pypappsocli Source: pypappsocli Version: 0.0.12-1~trixie Architecture: all Maintainer: Olivier Langella Installed-Size: 74 Depends: python3-click, python3-pymasschroqcbor, python3-pymzcbor (>= 0.0.6), python3-pypsmcbor (>= 0.0.12), python3:any, python3-importlib-resources, python3-pyodsstream, python3-pycborstream, python3-typst, python3-hdf5plugin Homepage: None Priority: optional Section: python Filename: pool/main/p/pypappsocli/python3-pypappsocli_0.0.12-1~trixie_all.deb Size: 9456 SHA256: 63f66c9999594a58437ca4f66fa3c2e86ee82de5fa332c332c9e4791dba5914a SHA1: 0ac51ba7844994e75b637d7cb9460416eb5239c0 MD5sum: 62df518df52eb78402d22efe01c2c257 Description: CLI (Command Line Interface) tools to handle proteomics data CLI (Command Line Interface) tools to handle proteomics data Package: python3-pypsmcbor Source: pypsmcbor Version: 0.0.12-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 212 Depends: python3-cbor2, python3-deprecated, python3-importlib-resources, python3-ms2pip, python3-pycborstream (>= 0.0.5), python3-pymzcbor (>= 0.0.6), python3:any Homepage: None Priority: optional Section: python Filename: pool/main/p/pypsmcbor/python3-pypsmcbor_0.0.12-1_all.deb Size: 26496 SHA256: c36fed6dbedf79eb3ca9dfa783b3c2525fe8be0ff906d5a3b7ee404e5c21d3b5 SHA1: 5cbed7947f7c0a7f93e558e45508e44aef9fa438 MD5sum: 0b29980ba91544a7562575f6d5fdb88c Description: Python package to handle PSM CBOR data files Python package to handle PSM CBOR data files Package: python3-pyteomics Source: pyteomics Version: 5.0.1-1pappso Architecture: all Maintainer: Olivier Langella Installed-Size: 1043 Depends: python3:any, python3-importlib-resources, python3-lxml, python3-numpy, python3-psims, python3-sqlalchemy (>= 1.4), python3-pandas Homepage: None Priority: optional Section: python Filename: pool/main/p/pyteomics/python3-pyteomics_5.0.1-1pappso_all.deb Size: 175236 SHA256: d7bb0c9a54ead8f27e1981d544572ff8318203a7723f95f75cf05392307c96f8 SHA1: 2a1f2c89991314efd6b358ae0fd4ed29baa009e4 MD5sum: cf53161b62d7ffdf1e85b6b409187749 Description: A framework for proteomics data analysis. .. image:: https://github.com/levitsky/pyteomics/workflows/tests/badge.svg :target: https://github.com/levitsky/pyteomics/actions?query=workflow%3Atests :alt: Test status . .. image:: https://img.shields.io/pypi/v/pyteomics.svg :target: https://pypi.org/project/pyteomics/ :alt: PyPI . .. image:: https://img.shields.io/conda/vn/bioconda/pyteomics :target: http://bioconda.github.io/recipes/pyteomics/README.html :alt: conda . .. image:: https://img.shields.io/readthedocs/pyteomics.svg :target: https://pyteomics.readthedocs.io/ :alt: Read the Docs (latest) . .. image:: https://img.shields.io/github/license/levitsky/pyteomics :target: https://www.apache.org/licenses/LICENSE-2.0 :alt: Apache License Package: python3-scikit-learn Version: 0:1.9.1-1~w2d0 Architecture: amd64 Maintainer: wheel2deb Installed-Size: 45592 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-joblib (>= 1.4.0), python3-narwhals (>= 2.0.1), python3-numpy (>= 1.24.1), python3-scipy (>= 1.10.0), python3-threadpoolctl (>= 3.5.0), python3:any Priority: optional Section: python Filename: pool/main/p/python3-scikit-learn/python3-scikit-learn_1.9.1-1~w2d0_amd64.deb Size: 7201756 SHA256: a46a9ec11ee07c955ceed03c5c7564df53a5c71c8905659109af757c377f97be SHA1: 573fa1f4a9bfa93f80414e0d01de8e84c38907ab MD5sum: f6fe74aec5ba86285d79b16a890672dc Description: A set of python modules for machine learning and data mining This package was generated by wheel2deb v0 Package: python3-slurm-aio-gui Source: slurm-aio-gui Version: 1.1.8-2pappso Architecture: all Maintainer: Olivier Langella Installed-Size: 1309 Depends: python3-bcrypt, python3-certifi, python3-cffi, python3-charset-normalizer, python3-cryptography (>= 46.0.0), python3-idna, python3-nacl, python3-packaging, python3-paramiko, python3-pycparser, python3-pyqt6, python3-pyqt6.sip, python3-requests, python3-toml, python3-urllib3, python3:any, python3-importlib-resources, python3-lxml, python3-numpy, python3-psims, python3-sqlalchemy (>= 1.4), python3-pandas Homepage: https://github.com/Morelli-01/slurm_gui Priority: optional Section: python Filename: pool/main/s/slurm-aio-gui/python3-slurm-aio-gui_1.1.8-2pappso_all.deb Size: 450976 SHA256: d9c93bfccf798c2f0de736d2ce4394bf00902a4d71b4e74997b97be779c0bfe9 SHA1: 9a81add2ab9ffe32287ba0f1992ef034f694cbb9 MD5sum: 506a13d5cdaba1e0013d4161dfc72774 Description: A modern, cross-platform GUI for managing and monitoring SLU # Slurm AIO . A modern, cross-platform GUI for managing and monitoring SLURM clusters, designed for simplicity and efficiency. . ## ✨ Features . * **Real-time Monitoring:** Visualize cluster status (Nodes, CPU, GPU, and RAM usage) and track the job queue as it happens. * **Project-Based Organization:** Group your jobs into projects for better management and clarity. * **Intuitive Job Management:** Easily create, submit, modify, duplicate, and cancel jobs through a user-friendly interface. * **Integrated Tools:** . * Browse remote directories on the cluster. * Open an SSH terminal directly to the cluster or a running job's node. * View job output and error logs in real-time. * **Notifications:** Get Discord notifications for job status changes (start, completion, failure). * **Modern UI:** A clean, dark-themed interface with helpful toast notifications. . ## 📦 Installation Options . You can install **Slurm AIO** in two ways: Package: python3-threadpoolctl Version: 0:3.7.0-1~w2d0 Architecture: all Maintainer: wheel2deb Installed-Size: 111 Depends: python3 (>= 3.9~), python3:any Priority: optional Section: python Filename: pool/main/p/python3-threadpoolctl/python3-threadpoolctl_3.7.0-1~w2d0_all.deb Size: 24508 SHA256: 01fa5ea90a9516c4f5be58c8f25bee9facb56348dc3e8d8097517560f6960a08 SHA1: 396a449f1a2bafcc1a9e5201b2f9c74ffb4e0cae MD5sum: f7f59b2c5cc623e694aeb266294c54c1 Description: threadpoolctl This package was generated by wheel2deb v0 Package: python3-typst Version: 0:0.15.0-1~w2d0 Architecture: amd64 Maintainer: wheel2deb Installed-Size: 558873 Depends: python3 (>= 3.8~), python3:any Priority: optional Section: python Filename: pool/main/p/python3-typst/python3-typst_0.15.0-1~w2d0_amd64.deb Size: 96469984 SHA256: 0e4a44981732da80e65480b8c7f16b83fbf3ba144f22e04943bd269bf9d7f832 SHA1: 44d21f131266bc9226676b9ff1da5922e0e95743 MD5sum: 1332627f94e5139b46676646bedb5dfd Description: Python binding to Typst, a new markup-based typesetting system that is powerful and easy to learn. This package was generated by wheel2deb v0 Package: sage Version: 0.15.0~beta.2-3 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 22473 Depends: libc6 (>= 2.39) Priority: optional Section: science Filename: pool/main/s/sage/sage_0.15.0~beta.2-3_amd64.deb Size: 6459372 SHA256: 3977208e693638b115b73bffac44f3e7dac934f673632149724c4d39a0a2d6c3 SHA1: 6d97fc46fd9106102c7eeb644bc685784f28d803 MD5sum: 0c3fa656926f45551ab176dbf7aa0503 Description: A very fast proteomics database search tool A very fast proteomics database search tool. Package: specoms Version: 0.0.25-2~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 1006 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-core0 (>= 0.10.2), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14), libpappsomspp-gui0 (>= 0.9.22) Priority: optional Section: science Filename: pool/main/s/specoms/specoms_0.0.25-2~trixie+1_amd64.deb Size: 218452 SHA256: df32f49bb20b694c6251fabaf385c9485ce2ce004aac3a0a00bea415b6f5fa1f SHA1: 9212bf7416c688281f39c7c1c2bd6b94a28e8519 MD5sum: 0ba7de7cf215e5748e7635a22bef4505 Description: Open Modification Search algorithm for MS/MS peptide identification DeepProt is based on SpecOMS published in David et al. 2017. Package: specoms-dbgsym Source: specoms Version: 0.0.25-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 17613 Depends: specoms (= 0.0.25-2~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specoms/specoms-dbgsym_0.0.25-2~trixie+1_amd64.deb Size: 17644052 SHA256: e8a3ef9ff7a641770fb1f95be93588cb6e95d786ff45b339616bdc594f9236b8 SHA1: 5f30e9aef66cbcda90e0a2c66e93df1bd9d7bc35 MD5sum: c874c8e1df3a02757675adaaf4214f02 Description: debug symbols for specoms Build-Ids: 619e4a0a61dd43ea2866b78fa721d47eaa9afe68 e9b2f6c93ba62fcc4983c2451b5c839db18654bf Package: specpeptidoms Version: 0.1.7-1~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 965 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.28-1~trixie+1), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Priority: optional Section: science Filename: pool/main/s/specpeptidoms/specpeptidoms_0.1.7-1~trixie+1_amd64.deb Size: 214556 SHA256: 87ba7b702c119dd3ee147c3b6ff226959680c3d1a5f60bc105133db21d27eb6d SHA1: 2c69990a12e58d30349e4714d3cc000be3e7da6a MD5sum: 1ae4abf530130873ed7193a712bf4c63 Description: MS/MS peptide identification directly on protein sequences not requiring tryptic digestion and peptide modeling SpecPeptidOMS is based on the work published in https://pubs.acs.org/doi/10.1021/acs.jproteome.4c00870. Package: specpeptidoms-dbgsym Source: specpeptidoms Version: 0.1.7-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 10365 Depends: specpeptidoms (= 0.1.7-1~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specpeptidoms/specpeptidoms-dbgsym_0.1.7-1~trixie+1_amd64.deb Size: 10104436 SHA256: d5f9b1c4b7b068bbaf7bfaecf3056730df51df7f84aa8da997ad715a2aa7b6bd SHA1: 38ad2fa10eddbaa25314aaf3262627ef9fc95c94 MD5sum: 19beb005f52e56f37e865962b415d933 Description: debug symbols for specpeptidoms Build-Ids: 27345a5c0cebbe691ae5cb69e137f426b54d8695 27ec5aed6c1bb68bf178d9ef39ace6b09c4c2b7f 4bd70c95b4ef6b0014b14c4934aade02287793ca 53a5db5b7d4760dcbec3a9cb8582ac60a5dbfa86 58d6b7b8b25751d2e146a7dad2bb26efb244b102 60c03af18ded76eb6a81c61b14b4b3e56b3ad1fe 645de4646277ad0ac7b64993989e1e0516ed3181 ac7a7662e0c2f115b07b4c1cda9064ebe3f040ef f5185532b6e3893023f1ceb8af51ba0bf886072f Package: tandemng Version: 0.3.17-5~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2178 Depends: libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.28-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Conflicts: tandemng-mass Homepage: http://www.thegpm.org/TANDEM/ Priority: optional Section: science Filename: pool/main/t/tandemng/tandemng_0.3.17-5~trixie1_amd64.deb Size: 389112 SHA256: 1e0e376ab9478cd5f0aafdb1e60e66262197f2f9a43a3ad9e3297faa336069ad SHA1: 07fb84c490421e86835f7660ba34dfd4a4fc367b MD5sum: 5fa6183debf14d5ffe9a17be93cbe2dc Description: mass spectrometry software for protein identification X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification. . This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf. . Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used. Package: tandemng-dbgsym Source: tandemng Version: 0.3.17-5~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 16299 Depends: tandemng (= 0.3.17-5~trixie1) Priority: optional Section: debug Filename: pool/main/t/tandemng/tandemng-dbgsym_0.3.17-5~trixie1_amd64.deb Size: 16011740 SHA256: 0ef74922ba6f3bc4309daf4a6106d1c0d3cad1a0a7fe3596cc56760f9e442bc2 SHA1: f85a2be3f696f9c7aa5eeb221211b27a25ba0e94 MD5sum: dd512bfca3e37aa821038563fd43bc1f Description: debug symbols for tandemng Build-Ids: 2a7c61a967529917f9e00c7bc6663737e94ae6b3 5c29eca7a097348e6240fb9008283cda2cda8908 70c95d8826436afcd7920e82e83a2a0e072f5c07 Package: typst-cli Version: 0.15.1-4 Architecture: amd64 Homepage: https://typst.app Maintainer: Olivier Langella Installed-Size: 49208 Depends: libc6 (>= 2.39), libssl3t64 (>= 3.0.0) Priority: optional Section: text Filename: pool/main/t/typst-cli/typst-cli_0.15.1-4_amd64.deb Size: 15755420 SHA256: b04f5c58088afc1e23f0e640a54b2bc6fc8684cc2875da0c3f87319487ac51a6 SHA1: 8157a2ff7f599fe111a2d986d7dbc10d4d40c92f MD5sum: 953f3f1f57270cd8b563241a235f6514 Description: The command line interface for Typst. The new foundation for documents. Package: xtpcpp Source: i2masschroq Version: 1.3.9-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp_1.3.9-1~trixie1_amd64.deb Size: 16548 SHA256: 9ca38be9e56cabc682510da6c05a7f252c3b4cca4ee388d2f32bd1aa7cf60207 SHA1: ca27c341e78c0067df7f14818d8d1842655bdbca MD5sum: 78ad23bce551c57e9804aceebf0d8eea Description: Transitional package from xtpcpp to i2masschroq The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time. Package: xtpcpp-tools Source: i2masschroq Version: 1.3.9-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq-tools, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp-tools_1.3.9-1~trixie1_amd64.deb Size: 16560 SHA256: 533c0506c2bf9dc4cee23908a90cebbe5dd0b9969827b4dceaab02c668ee0396 SHA1: 821299e0e73f5fba32f23a43bf5ab9e18963f5de MD5sum: 082191ff95b59c98ff337e4df0ebd5d0 Description: Transitional package from xtpcpp-tools to i2masschroq-tools The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time.