Package: fastamanager Version: 2.0.1-6 Architecture: all Maintainer: Olivier Langella Installed-Size: 206 Depends: openjdk-8-jre (>= 1.8), liblog4j1.2-java (>= 1.2.15), libcommons-httpclient-java (>= 3.1), libcommons-codec-java (>= 1.4), libcommons-logging-java (>= 1.1.1) Homepage: http://pappso.inra.fr/ Priority: optional Section: science Filename: pool/main/f/fastamanager/fastamanager_2.0.1-6_all.deb Size: 164438 SHA256: 4dfa35d0239b761598ffdbe337f3a3226ae53546069e5e2539212915efc8074a SHA1: 24f678e401c096316316fcbdafe09faff22a82f0 MD5sum: 50d4b31c6bdc7f07188308ac3cbb7e39 Description: helps to manage a Fasta file collection helps to manage a Fasta file collection Package: libodsstream-dev Source: libodsstream Version: 0.7.0-2 Architecture: all Maintainer: Olivier Langella Installed-Size: 9 Depends: libodsstream-qt5-dev Homepage: http://pappso.inra.fr/bioinfo Priority: extra Section: oldlibs Filename: pool/main/libo/libodsstream/libodsstream-dev_0.7.0-2_all.deb Size: 3014 SHA256: 0aecf33206a7a0f7800ed29830f3e90dc74914dee3e80ba571273508413fdf21 SHA1: 948ea2b060f1043bc35c5726515d4e295ba78cb1 MD5sum: 5fd3feb8e042ffd2c1654ff5a9931dd5 Description: transitional package This is a transitional package. It can safely be removed. Package: libodsstream-doc Source: libodsstream Version: 0.7.1-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 1299 Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libo/libodsstream/libodsstream-doc_0.7.1-1_all.deb Size: 130992 SHA256: 4299a10abd57f87d4b62cd0a5c6be7ef38b59faf924bfcc4af6962658e28b6fe SHA1: bf25c53879bd12a5b71f47b9c36926dddfdc9573 MD5sum: ea48e31780804f3d85b7dff3c7e5aab0 Description: doxygen documentation of the ODSstream library libodsstream provides a simple way to read and write Open Document Spreadsheet files using streams only to be memory efficient. . This package provides the documentation of the library. Package: libodsstream-qt5 Source: libodsstream Version: 0.7.0-2 Architecture: all Maintainer: Olivier Langella Installed-Size: 9 Depends: libodsstream-qt5-0 Homepage: http://pappso.inra.fr/bioinfo Priority: extra Section: oldlibs Filename: pool/main/libo/libodsstream/libodsstream-qt5_0.7.0-2_all.deb Size: 3010 SHA256: 25faf97b549131c858c9c6fa263a8de32ae90cf7445f60544356446997171c7a SHA1: 474b34395aeb7c272ade25337cac8fd384f2d5e3 MD5sum: 165a398a07eb56ac26a8bea0a71da99c Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-dev Source: libpappsomspp Version: 0.5.0-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 10 Depends: libpappsomspp-qt5-dev Homepage: http://pappso.inra.fr/bioinfo Priority: extra Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-dev_0.5.0-1_all.deb Size: 4132 SHA256: 7d9d6238c8569151675183148549c800a9a41d6edd51579c6356a234ad860ab6 SHA1: e8b9d8507d24157db0b43fad5567a9fe254a3b55 MD5sum: 191b3a65bb6ca7d229ca37973524663f Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-doc Source: libpappsomspp Version: 0.6.3-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 30907 Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libp/libpappsomspp/libpappsomspp-doc_0.6.3-1_all.deb Size: 6099758 SHA256: ede6c1c850c78a63d2117025d7945bfa3eeb2ef50d0ca8957e46ad8bd9c33686 SHA1: 80464e1ae87cf589352a52ab1867fd48fbd50802 MD5sum: 41840a09ee7bbabd5b554493e0b0a844 Description: C++ library to handle proteomic data (developer documentation) libpappsomspp provides a simple API to handle peptides, spectrum, ions, amino acid mofifications. . This packages ships the Doxygen-based developer documentation. Package: libpappsomspp-qt5 Source: libpappsomspp Version: 0.5.0-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 10 Depends: libpappsomspp-qt5-0 Homepage: http://pappso.inra.fr/bioinfo Priority: extra Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-qt5_0.5.0-1_all.deb Size: 4130 SHA256: 8727238f7a60a81527eb476cec074b737848c7da1ee45f583d136f5549eaadc4 SHA1: 14aca54f6a668e5e2e261f2c65e0769cdc33428f MD5sum: 4b1b9c5d973eff7cf77c2a896d5f244e Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-qt5-0 Source: libpappsomspp Version: 0.6.3-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 11 Depends: libpappsomspp0 Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-qt5-0_0.6.3-1_all.deb Size: 4810 SHA256: 09628ac027d9f0df74e1f121ffd63bdb889a688b7b1251bb3a830b6c5b739fe2 SHA1: a02a80479f17c43724ddd7fecb6a8d819342860b MD5sum: fa7932b00755c15a31166ed15ac6c3da Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-qt5-dev Source: libpappsomspp Version: 0.6.3-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 11 Depends: libpappsomspp-dev Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-qt5-dev_0.6.3-1_all.deb Size: 4814 SHA256: 8b7e1996e20af9d97defb882ca9abbc41d7088471435ef943596fe6d0948a393 SHA1: 8175e1d481d558704ec93ab1c229de4013569154 MD5sum: 9e1458fce96fd956c3ef9fb266a260a2 Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-widget-dev Source: libpappsomspp Version: 0.5.0-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 10 Depends: libpappsomspp-widget-qt5-dev Homepage: http://pappso.inra.fr/bioinfo Priority: extra Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-widget-dev_0.5.0-1_all.deb Size: 4146 SHA256: b365e777ff9a729da52176017382f44eda3ea54100db9347045eb1fcebdf7acf SHA1: 297dcb884b6038038e4549022b9bbc4916bc778d MD5sum: 1f06135e4d02b612f0626f475ac43af8 Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-widget-qt5 Source: libpappsomspp Version: 0.5.0-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 10 Depends: libpappsomspp-widget-qt5-0 Homepage: http://pappso.inra.fr/bioinfo Priority: extra Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-widget-qt5_0.5.0-1_all.deb Size: 4142 SHA256: b2f406c66db466db8e5abde06618f5656ebcdee5ad6f70121890cd41ac11d173 SHA1: a3792336993ad399fb9f03839354a282bb412a02 MD5sum: 9e5a97d65723cd0b8c13e8ff3f1d1f14 Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-widget-qt5-0 Source: libpappsomspp Version: 0.6.3-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 11 Depends: libpappsomspp-widget0 Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-widget-qt5-0_0.6.3-1_all.deb Size: 4824 SHA256: 32bb4000efc948e2cbbf82a51ee2d5259791cf02b1c28d0ec32052a7ad244173 SHA1: eafde8003c80e0663d522d501464ac20e13d0ce8 MD5sum: 446d4333b8ea82b2a56ed864d928346d Description: transitional package This is a transitional package. It can safely be removed. Package: libpappsomspp-widget-qt5-dev Source: libpappsomspp Version: 0.6.3-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 11 Depends: libpappsomspp-widget-dev Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/libp/libpappsomspp/libpappsomspp-widget-qt5-dev_0.6.3-1_all.deb Size: 4826 SHA256: 6e0df076f8b10eba45740d41e4f000e6db21912be1c35602213df5550bf5565b SHA1: 03f698fa548e2a734b4e1e33b99e5b6ed0e56a37 MD5sum: 99781c7ad542eb2dc7a75b57473c245a Description: transitional package This is a transitional package. It can safely be removed. Package: libpwiz-doc Source: libpwiz Version: 3.0.18342-2~stretch+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 77220 Depends: libjs-jquery Homepage: http://proteowizard.sourceforge.net/downloads.shtml Priority: optional Section: doc Filename: pool/main/libp/libpwiz/libpwiz-doc_3.0.18342-2~stretch+1_all.deb Size: 4167526 SHA256: feb590a14bf312a4609ef4007be3ecaa21b69e3184678c9e842d35cb3af95d2c SHA1: 44081fd8a845b909f570dd5a7611b43337ef873e MD5sum: b8482c424ea8f21f530282e83af3cd7c Description: set of programs to perform proteomics data analyses (doc) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . This package ships the documentation to the proteowizard software along with example programs (source code and binaries). Package: libqcustomplot-doc Source: qcustomplot Version: 2.0.1+dfsg1-1~stretch+1 Architecture: all Maintainer: Debian Science Maintainers Installed-Size: 5813 Homepage: http://www.qcustomplot.com Priority: optional Section: doc Filename: pool/main/q/qcustomplot/libqcustomplot-doc_2.0.1+dfsg1-1~stretch+1_all.deb Size: 972884 SHA256: 4fec6d391afec7ad1f52d754d4c4e7470ae2baec7dcaff52edbb84362e5d1256 SHA1: ada2c3bc2e6e948c7b95e8e05e28c5e5d546fe1c MD5sum: e1afe5b54ba7c364d683b0d876582f66 Description: Qt C++ widget for plotting - documentation and examples QCustomPlot plotting library focuses on making good looking, publication quality 2D plots, graphs and charts, as well as offering high performance for realtime visualization applications. The package contains examples and documentation. Package: masschroq-condor Source: masschroq Version: 2.2.17-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 22 Depends: masschroq, condor Suggests: masschroq-doc, masschroq-gui, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: science Filename: pool/main/m/masschroq/masschroq-condor_2.2.17-1_all.deb Size: 9634 SHA256: 110f1592d12b8fa4903db8469167c2dcee709aa7140be118eebdf7b00872f8e3 SHA1: 4b030c898a7a02ba203afd347470da84a992da0d MD5sum: b1bb75b8439e2ce959f0a6a448e9eda2 Description: Perl script to launch MassChroQ via condor job queue Perl script to launch MassChroQ via condor job queue Package: masschroq-doc Source: masschroq Version: 2.2.17-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 779 Suggests: masschroq, masschroq-gui, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: science Filename: pool/main/m/masschroq/masschroq-doc_2.2.17-1_all.deb Size: 787690 SHA256: 782755e1679b6c92530bca80ebc99d5726c9b12569e0ef80bf0865238bd4d4c7 SHA1: 1984b2418b5fcb83eef6fd1408fdadb4ab868630 MD5sum: 7e2b4a4f456edd33b3a94b51ad3825e9 Description: Mass Chromatogram Quantification documentation Installs PDF documentation for MassChroQ in /usr/share/doc/masschroq Package: massxpert Source: msxpertsuite Version: 3.7.0-1~stretch+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 20 Depends: msxpertsuite Homepage: https://www.msxpertsuite.org/ Priority: extra Section: oldlibs Filename: pool/main/m/msxpertsuite/massxpert_3.7.0-1~stretch+1_all.deb Size: 13812 SHA256: fa98910d2434722a1e56656c7be201bfead7cd5609f21d5e4229cdfe9f3cf402 SHA1: 1e42a522b13d60de154e9f77aa093cc17ff8e50a MD5sum: cadf2d9aee04ae1e6a8bf21b5e17c6a4 Description: transitional package This is a transitional package. It can safely be removed. Package: massxpert-data Source: msxpertsuite Version: 3.7.0-1~stretch+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 20 Depends: msxpertsuite-data Homepage: https://www.msxpertsuite.org/ Priority: extra Section: oldlibs Filename: pool/main/m/msxpertsuite/massxpert-data_3.7.0-1~stretch+1_all.deb Size: 13824 SHA256: f58d42b5259a6bc6ffaa1e3dfa7aa8b0fefd93e8d94a167bc04755fd6194a0e5 SHA1: d85c6e90bed9fa3277d49c5fec76d7e8c8e66daa MD5sum: 410c6b92d6cd6ac6bb0e2bede5be201f Description: transitional package This is a transitional package. It can safely be removed. Package: massxpert-doc Source: msxpertsuite Version: 3.7.0-1~stretch+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 20 Depends: msxpertsuite-doc Homepage: https://www.msxpertsuite.org/ Priority: extra Section: oldlibs Filename: pool/main/m/msxpertsuite/massxpert-doc_3.7.0-1~stretch+1_all.deb Size: 13816 SHA256: 4f18b3faac62754af0d7c10eaae3d3575149b727599f176d42b6ebec2b85377c SHA1: d22c87f481a254e04ac37be28ae33c1a7a75946d MD5sum: 30c4101489f2d6d7cefdba45ff2b14b5 Description: transitional package This is a transitional package. It can safely be removed. Package: ms-eater Version: 0.3.5-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 100 Depends: python-matplotlib, python-qt4 Multi-Arch: foreign Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: libs Filename: pool/main/m/ms-eater/ms-eater_0.3.5-1_all.deb Size: 16910 SHA256: eeb6b430e34a7d45ee69cd604165a4df93390eb2b3c6392998b814ac180ed577 SHA1: 217d6b5d5068040fb2e5aa1d44194473b36ea825 MD5sum: 56e1514347a014790ffd28c92c5b8dfe Description: set of proteomic tools used on PAPPSO. computes peptide mass, isotope ratio, fragmentation products, protein grouper. Package: msxpertsuite-data Source: msxpertsuite Version: 3.7.0-1~stretch+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 1325 Conflicts: massxpert-data (<< 3.6.2) Breaks: massxpert-data (<< 3.6.2) Replaces: massxpert-data (<< 3.6.2) Homepage: https://www.msxpertsuite.org/ Priority: optional Section: science Filename: pool/main/m/msxpertsuite/msxpertsuite-data_3.7.0-1~stretch+1_all.deb Size: 88424 SHA256: 00671f1281cde6b937776eb091b8f39bd8c45e63f8a86e93d9c867096a02952a SHA1: 43ce367b18acc81694dbb3bc6b205fe21906f2ca MD5sum: 503812033a4926f8fe55ac3aec3bc8d3 Description: mass spectrometry software suite - arch-indep data msXpertSuite is a collection of programs to simulate and analyse mass spectrometric data obtained on linear (bio-)polymers. It is the successor of GNU polyXmass, first, and of massXpert, second. . This package contains the architecture-independent data required for the proper functioning of msxpertsuite. For example, polymer chemistry definition files are in this package, for use with the massxpert program. Package: msxpertsuite-devdoc Source: msxpertsuite Version: 3.7.0-1~stretch+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 851899 Depends: libjs-jquery Homepage: https://www.msxpertsuite.org/ Priority: optional Section: doc Filename: pool/main/m/msxpertsuite/msxpertsuite-devdoc_3.7.0-1~stretch+1_all.deb Size: 758754698 SHA256: c21f7591bba8b9dae9d6710c8ee414effeb1a6c5db89404f58a4f7d00ca9d271 SHA1: a29775e630c77cdf0a56bbac6a5575336eba0942 MD5sum: 155feaa8588c1bf4d8da82bd880d393a Description: mass spectrometry software suite - developer doc msXpertSuite is a collection of programs to simulate and analyse mass spectrometric data obtained on linear (bio-)polymers. It is the successor of GNU polyXmass, first, and of massXpert, second. . This package contains the developer doxygen-based doc. Package: msxpertsuite-doc Source: msxpertsuite Version: 3.7.0-1~stretch+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 14781 Conflicts: massxpert-doc (<< 3.6.2) Breaks: massxpert-doc (<< 3.6.2) Replaces: massxpert-doc (<< 3.6.2) Homepage: https://www.msxpertsuite.org/ Priority: optional Section: doc Filename: pool/main/m/msxpertsuite/msxpertsuite-doc_3.7.0-1~stretch+1_all.deb Size: 14076744 SHA256: 39b7b1edc5244c52df0ca616970543ab7dba280c7df2a2d16c28e92f98c2a865 SHA1: 9c1eaa57fd842d640ab611355697540a75f14207 MD5sum: 9f7a183a436b727370b46c66fad830c0 Description: mass spectrometry software suite - manuals msXpertSuite is a collection of programs to simulate and analyse mass spectrometric data obtained on linear (bio-)polymers. It is the successor of GNU polyXmass, first, and of massXpert, second. . This package contains the manuals in PDF format. Package: mzmine Version: 2.12-5 Architecture: all Maintainer: Olivier Langella Installed-Size: 75199 Depends: openjdk-8-jre (>= 1.8), libjfreechart-java, r-cran-rjava, libjama-java, libautomaton-java, libaxis-java, libbcprov-java, libantlr-java, libcommons-io-java, libcommons-logging-java, liblog4j1.2-java, libcommons-cli-java, libcommons-codec-java, libcommons-collections3-java, libcommons-compress-java, libcommons-discovery-java, libcommons-httpclient-java, libcommons-math-java, libjargs-java, cup, javahelp2, libjgrapht0.6-java, libjsr305-java, libmysql-java, libslf4j-java, libstax-java, libstax2-api-java, libvecmath-java, libwsdl4j-java, libxalan2-java, libxerces2-java, libxom-java, libxpp3-java Homepage: http://mzmine.sourceforge.net/ Priority: optional Section: science Filename: pool/main/m/mzmine/mzmine_2.12-5_all.deb Size: 69522318 SHA256: b5dcff0811b0288341f53de1215df052132ba53369caaee643f0030fd0db7511 SHA1: af6279b325c0999f7c177decf37d839216da1e2e MD5sum: c748f4729ff5ba109cf406a0cfc7d968 Description: mass-spectrometry data processing MZmine 2 is an open-source project delivering a software for mass-spectrometry data processing, with the main focus on LC-MS data. It is based on the original MZmine toolbox described in 2006 Bioinformatics publication, but has been completely redesigned and rewritten since then. Our main goal is to provide a user-friendly, flexible and easily extendable framework with a complete set of modules covering the entire LC-MS data analysis workflow. Package: xtandempipeline Version: 3.4.4-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 3038 Depends: libswt-cairo-gtk-3-jni, icedtea-netx, openjdk-8-jre (>= 1.8), libswt-gtk-3.5-java | libswt-gtk-3.6-java | libswt-gtk-3-java, libxmlgraphics-commons-java, libbatik-java (>= 1.7), libswt-mozilla-gtk-3.5-jni | libswt-webkit-gtk-3.6-jni | libswt-webkit-gtk-3-jni, tandem-mass, liblog4j1.2-java (>= 1.2.15), libcommons-httpclient-java (>= 3.1), libcommons-codec-java (>= 1.4), libcommons-logging-java (>= 1.1.1), libwebkitgtk-1.0-0 Conflicts: xtandem-cyclone, xtandemparser (<< 2.9.8-2~) Replaces: xtandemparser (<< 2.9.8-2~) Homepage: http://pappso.inra.fr/ Priority: optional Section: main/science Filename: pool/main/x/xtandempipeline/xtandempipeline_3.4.4-1_all.deb Size: 2723764 SHA256: bd09005057868480ce6dccf5d307cf5accb4b490935b2650930a89f0e24308da SHA1: c9a426c50dc0876e520d34b2fc6e903bd614ba8e MD5sum: 052db457403cfeab3fcbbb28aa7d448a Description: loads and parses the xml results product by X!Tandem This Java application loads and parses the xml results product by X!Tandem, applies filters on E-value at peptide and protein levels, filters proteins on the basis of a minimum number of unique peptides, removes proteins specified in a contaminant database... Package: xtandempipeline-doc Source: xtandempipeline Version: 3.4.4-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 2690 Suggests: xtandempipeline Homepage: http://pappso.inra.fr/ Priority: optional Section: main/science Filename: pool/main/x/xtandempipeline/xtandempipeline-doc_3.4.4-1_all.deb Size: 2746736 SHA256: 856d642a17d01fdc63a4c8f99159163fe1a5749969fe443dce8176b67280181b SHA1: a112fdfa2ce9c0f4e4d654a4050680b0d0b46ad1 MD5sum: 5b9ee2c9422a7e408a098cffa86c5733 Description: X!TandemPipeline documentation Installs PDF documentation for X!TandemPipeline in /usr/share/doc/xtandempipeline-doc