Package: masschroq Version: 2.2.0-15 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 57 Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libodsstream-qt4, libpappsomspp-qt4, libqt4-network (>= 4:4.5.3), libqt4-xml (>= 4:4.5.3), libqt4-xmlpatterns (>= 4:4.5.3), libqtcore4 (>= 4:4.8.0), libqtgui4 (>= 4:4.5.3), libstdc++6 (>= 4.1.1), masschroq-common (= 2.2.0-15) Suggests: masschroq-doc, masschroq-gui, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/m/masschroq/masschroq_2.2.0-15_amd64.deb Size: 13140 SHA256: 846056b5102ec0a6cff6b689ec30724b5d8964029693073a6001b5839c9d02ad SHA1: 3946b45481e84374fa638af14c5fb307f38e301e MD5sum: 32585b960dc50ecff011c1731f04f607 Description: Mass Chromatogram Quantification CLI (Command Line Interface) MassChroQ (Mass Chromatogram Quantification) software performs quantification of data obtained from LC-MS (Liquid Chromatography - Mass Spectrometry) techniques. In particular it performs : retention-time alignment of runs, XIC extraction and filtering, peak detection and quantification. Package: masschroq-common Source: masschroq Version: 2.2.0-15 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 901 Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.9), libqtcore4 (>= 4.6.3), libpappsomspp-qt4 (= 0.2.30-1), libodsstream-qt4 Suggests: masschroq, masschroq-gui, masschroq-studio Conflicts: masschroq (<< 1.5.0) Replaces: masschroq (<< 1.5.0) Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/m/masschroq/masschroq-common_2.2.0-15_amd64.deb Size: 271172 SHA256: 7c7c8b54d123b43d5091ca364601819fb843dea4fc2f53fe35912a1e6ae0ee48 SHA1: 3c3e18754506e37eec8c81432f4d7ae9d6d3a072 MD5sum: 243c9040bc088347a90b73d367d45a74 Description: Mass Chromatogram Quantification shared libraries MassChroQ (Mass Chromatogram Quantification) software performs quantification of data obtained from LC-MS (Liquid Chromatography - Mass Spectrometry) techniques. In particular it performs : retention-time alignment of runs, XIC extraction and filtering, peak detection and quantification. Package: masschroq-condor Source: masschroq Version: 2.2.0-15 Architecture: all Maintainer: Olivier Langella Installed-Size: 40 Depends: masschroq, condor Suggests: masschroq-doc, masschroq-gui, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/m/masschroq/masschroq-condor_2.2.0-15_all.deb Size: 8308 SHA256: 8b931d4dcb9af4e0ecb47994d56b86c47499b67c9f53e86ca9b7e1c61e88da4a SHA1: 5d703b413147605f517979bb17b7e2f018c5f463 MD5sum: 257797b428cad89f4aa53282d62648a8 Description: Perl script to launch MassChroQ via condor job queue Perl script to launch MassChroQ via condor job queue Package: masschroq-doc Source: masschroq Version: 2.2.0-15 Architecture: all Maintainer: Olivier Langella Installed-Size: 824 Suggests: masschroq, masschroq-gui, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/m/masschroq/masschroq-doc_2.2.0-15_all.deb Size: 814052 SHA256: 2559c3870b2dd8f495658104fb13e71fc5bf20fd28682e2851b2223de49b9d31 SHA1: 0e62e872e758a46a893171ed816c6bedbdd6a734 MD5sum: 42221426be327c079c1725e9473b1066 Description: Mass Chromatogram Quantification documentation Installs PDF documentation for MassChroQ in /usr/share/doc/masschroq Package: masschroq-gui Source: masschroq Version: 2.2.0-15 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 100 Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libodsstream-qt4, libpappsomspp-qt4, libqt4-network (>= 4:4.5.3), libqt4-xml (>= 4:4.5.3), libqt4-xmlpatterns (>= 4:4.5.3), libqtcore4 (>= 4:4.5.3), libqtgui4 (>= 4:4.5.3), libstdc++6 (>= 4.1.1), masschroq-common (= 2.2.0-15) Suggests: masschroq-doc, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/m/masschroq/masschroq-gui_2.2.0-15_amd64.deb Size: 25294 SHA256: f6e9cfb47c36d47517cda8d3223da2ae617284ca6d79ecb8ba60fe9614f6ed77 SHA1: 26cd4f04fc30f684c34cd8d1ef2a35b2dcd2ec42 MD5sum: 1f7ef1f765958ccdc7ab1f465b57497f Description: Mass Chromatogram Quantification graphical user interface MassChroQ (Mass Chromatogram Quantification) software performs quantification of data obtained from LC-MS (Liquid Chromatography - Mass Spectrometry) techniques. In particular it performs : retention-time alignment of runs, XIC extraction and filtering, peak detection and quantification. Package: masschroq-studio Source: masschroq Version: 2.2.0-15 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 343 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libodsstream-qt4, libpappsomspp-qt4, libqt4-network (>= 4:4.5.3), libqt4-xml (>= 4:4.5.3), libqt4-xmlpatterns (>= 4:4.5.3), libqtcore4 (>= 4:4.6.1), libqtgui4 (>= 4:4.5.3), libqwt6 (>= 6.0.0), libstdc++6 (>= 4.6), masschroq-common (= 2.2.0-15) Suggests: masschroq-doc, masschroq-gui Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/m/masschroq/masschroq-studio_2.2.0-15_amd64.deb Size: 92630 SHA256: 4dd3e0ce61ed42e0e1ba40e7a7d762c7fe395783b5415579ede51a560eb2845f SHA1: 2d064f80e345790b07231f58dc7a06f114166d9b MD5sum: c62171aa2170b16d9a0a8e918d871ccb Description: Mass Chromatogram Quantification graphical user interface to edit parameters MassChroQ (Mass Chromatogram Quantification) software performs quantification of data obtained from LC-MS (Liquid Chromatography - Mass Spectrometry) techniques. In particular it performs : retention-time alignment of runs, XIC extraction and filtering, peak detection and quantification. Package: tandem-mass Version: 1:20151215-4~jessie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 686 Depends: libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.9) Homepage: http://www.thegpm.org/TANDEM/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/t/tandem-mass/tandem-mass_20151215-4~jessie+1_amd64.deb Size: 219190 SHA256: 861a01eb290824838707c9d39aa6ed3450c7dc8181b06ad6c37eb8b953cd9133 SHA1: 873299466f90621878da375fa79cb5774d77e012 MD5sum: cc0915c4fa2242661f818bfe3811dfcb Description: mass spectrometry software for protein identification X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification. . This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf. . Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used. Package: xtandempipeline Version: 3.4.0-6 Architecture: all Maintainer: Olivier Langella Installed-Size: 3113 Depends: libswt-cairo-gtk-3-jni, icedtea-netx, openjdk-6-jre (>= 1.6) | openjdk-7-jre (>= 1.7), libswt-gtk-3.5-java | libswt-gtk-3.6-java | libswt-gtk-3-java, libbatik-java (>= 1.7), libswt-mozilla-gtk-3.5-jni | libswt-webkit-gtk-3.6-jni | libswt-webkit-gtk-3-jni, tandem-mass, liblog4j1.2-java (>= 1.2.15), libcommons-httpclient-java (>= 3.1), libcommons-codec-java (>= 1.4), libcommons-logging-java (>= 1.1.1), libwebkitgtk-1.0-0 Conflicts: xtandem-cyclone, xtandemparser (<< 2.9.8-2~) Replaces: xtandemparser (<< 2.9.8-2~) Homepage: http://pappso.inra.fr/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/x/xtandempipeline/xtandempipeline_3.4.0-6_all.deb Size: 2755494 SHA256: e617bc007f4108f61447d5215ee98ee24c011d35119d6f0a4cc93c51d67308a7 SHA1: 515ffaa0f1acc9c23e4f57a60e349a6e9a3d85e3 MD5sum: 1bb1635209d81ba74bbb8aec3ee3f8f1 Description: loads and parses the xml results product by X!Tandem This Java application loads and parses the xml results product by X!Tandem, applies filters on E-value at peptide and protein levels, filters proteins on the basis of a minimum number of unique peptides, removes proteins specified in a contaminant database... Package: xtandempipeline-doc Source: xtandempipeline Version: 3.4.0-6 Architecture: all Maintainer: Olivier Langella Installed-Size: 2697 Suggests: xtandempipeline Homepage: http://pappso.inra.fr/ Priority: optional Section: pappsodev/science Filename: pool/pappsodev/x/xtandempipeline/xtandempipeline-doc_3.4.0-6_all.deb Size: 2735112 SHA256: f58b5281f9a1d4f1cbb047f0ee7846388a640e6736c89bac5ddee6ca04a7cbdb SHA1: 2a60f06ceba2a341d991b6189716a5b2ebca965c MD5sum: 13308faec40e18d6b6c15077f8e4cafd Description: X!TandemPipeline documentation Installs PDF documentation for X!TandemPipeline in /usr/share/doc/xtandempipeline-doc