Package: fastamanager Version: 2.0.1-5 Architecture: all Maintainer: Olivier Langella Installed-Size: 230 Depends: openjdk-6-jre (>= 1.6) | openjdk-7-jre (>= 1.7), liblog4j1.2-java (>= 1.2.15), libcommons-httpclient-java (>= 3.1), libcommons-codec-java (>= 1.4), libcommons-logging-java (>= 1.1.1) Homepage: http://pappso.inra.fr/ Priority: optional Section: science Filename: pool/main/f/fastamanager/fastamanager_2.0.1-5_all.deb Size: 164538 SHA256: 85668f6c279ab69eb769283f11e8953ebdeb916f0080134f4216fed324fc81bb SHA1: 7a7e032d840e4121d08b1df0ea036642a3253f3d MD5sum: e57cce801553b43404d29b10547053c7 Description: helps to manage a Fasta file collection helps to manage a Fasta file collection Package: masschroq-condor Source: masschroq Version: 2.2.2-4 Architecture: all Maintainer: Olivier Langella Installed-Size: 40 Depends: masschroq, condor Suggests: masschroq-doc, masschroq-gui, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: science Filename: pool/main/m/masschroq/masschroq-condor_2.2.2-4_all.deb Size: 8658 SHA256: 85066ad457c69211630dc3b804392b2fd9ab250d5858d0337269ed93e306ac0b SHA1: 6ee89104c086b01a716b6f19dd9b63bbf151169c MD5sum: cce55573691d64c2e620722146764b22 Description: Perl script to launch MassChroQ via condor job queue Perl script to launch MassChroQ via condor job queue Package: masschroq-doc Source: masschroq Version: 2.2.2-4 Architecture: all Maintainer: Olivier Langella Installed-Size: 796 Suggests: masschroq, masschroq-gui, masschroq-studio Homepage: http://pappso.inra.fr/bioinfo/masschroq/ Priority: optional Section: science Filename: pool/main/m/masschroq/masschroq-doc_2.2.2-4_all.deb Size: 785796 SHA256: f8a5fd3892a3b5bb8bfbf53d9030ae46023672494a2b0b8a627a35bd0069e8e5 SHA1: 10f5837f74ac7ae2990d76b324a09249253b0e93 MD5sum: fe37762d3db178af66fb0b476df52adb Description: Mass Chromatogram Quantification documentation Installs PDF documentation for MassChroQ in /usr/share/doc/masschroq Package: ms-eater Version: 0.3.4-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 100 Depends: python-matplotlib, python-qt4 Multi-Arch: foreign Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: libs Filename: pool/main/m/ms-eater/ms-eater_0.3.4-1_all.deb Size: 13204 SHA256: 7c683adc31b034e51eadae0632509bd38fdace629781c7c5a103cd194eb874e0 SHA1: b6780ed3fb2a929fe8562af4ac6483f419948330 MD5sum: 9fde13e11b591636523960888a5ea7c1 Description: set of proteomic tools used on PAPPSO. computes peptide mass, isotope ratio, fragmentation products, protein grouper. Package: mzmine Version: 2.12-3 Architecture: all Maintainer: Olivier Langella Installed-Size: 75177 Depends: openjdk-6-jre (>= 1.6) | openjdk-7-jre (>= 1.7), libjfreechart-java, r-cran-rjava, libjama-java, libgnujaf-java, libautomaton-java, libaxis-java, libbcprov-java, libantlr-java, libcommons-io-java, libcommons-logging-java, liblog4j1.2-java, libcommons-cli-java, libcommons-codec-java, libcommons-collections3-java, libcommons-compress-java, libcommons-discovery-java, libcommons-httpclient-java, libcommons-math-java, libjargs-java, cup, javahelp2, libjgrapht0.6-java, libjsr305-java, libmysql-java, libslf4j-java, libstax-java, libstax2-api-java, libvecmath-java, libwsdl4j-java, libxalan2-java, libxerces2-java, libxom-java, libxpp3-java Homepage: http://mzmine.sourceforge.net/ Priority: optional Section: science Filename: pool/main/m/mzmine/mzmine_2.12-3_all.deb Size: 69230424 SHA256: 04ada47f5bea30965b91280a5887cdf90c816f9f75072711752251aee94099fb SHA1: 0afec9e1b7e8c4e0c60b49ab4d2198fd339e54d7 MD5sum: 8e25a426ac0c12825a904c4f133a11c4 Description: mass-spectrometry data processing MZmine 2 is an open-source project delivering a software for mass-spectrometry data processing, with the main focus on LC-MS data. It is based on the original MZmine toolbox described in 2006 Bioinformatics publication, but has been completely redesigned and rewritten since then. Our main goal is to provide a user-friendly, flexible and easily extendable framework with a complete set of modules covering the entire LC-MS data analysis workflow. Package: pwiz-tools Version: 3.0.4626 Architecture: all Maintainer: Olivier Langella Installed-Size: 26 Depends: tandem-mass Conflicts: libpwiz-tools Provides: libpwiz-dev, libpwiz-doc, libpwiz3 Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: misc Filename: pool/main/p/pwiz-tools/pwiz-tools_3.0.4626_all.deb Size: 2186 SHA256: a98c38c11f7e2154b4920e970e0a51a44cb87160d0521a13fbbd822776e880a6 SHA1: bca6e7835b7212992fca4687fe784290982e7294 MD5sum: f85a97440b63db847fd9dc4b888f9d6a Description: fake package to uninstall Wheezy pwiz-tools bakport one fake package to uninstall Wheezy pwiz-tools bakport one Package: python-pappsoms-tools Source: pappsoms-tools Version: 0.2.0-2 Architecture: all Maintainer: Olivier Langella Installed-Size: 78 Depends: python, python-matplotlib, python-qt4 Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: libs Filename: pool/main/p/pappsoms-tools/python-pappsoms-tools_0.2.0-2_all.deb Size: 9766 SHA256: d9e70d10f4cbc376451dbc5185a807a8eea8d51aea373d4293aa7c545fb86cdd SHA1: e90f67dc3afbcf8f0555e5808dd5f5f5018b2d32 MD5sum: b422fd08ec07850bb398aa7123e0786b Description: set of proteomic tools used on PAPPSO. computes peptide mass, isotope ratio, fragmentation products, protein grouper. Package: task-pappso-tools Version: 0.3.5 Architecture: all Maintainer: Olivier Langella Installed-Size: 27 Depends: fastamanager, beads, masschroq-gui, masschroq-studio, masschroq-doc, xtandempipeline, openms, topp, grouping-protein, pepnovopipeline, denovopipeline-ng, xtandempipeline-doc, massxpert, mmass, mzmine Conflicts: pwiz-tools (<= 3.0.4625) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: misc Filename: pool/main/t/task-pappso-tools/task-pappso-tools_0.3.5_all.deb Size: 2374 SHA256: 602db75c399c1d90c8ff61b12023f089665bf2122eafb60691d70c5e42092c65 SHA1: b5a4f76abe5bf5c9a5871fa1990cf3bd3486dad1 MD5sum: 2ba40195f448212a562820d4be1ee6f8 Description: install proteomic software used on PAPPSO install proteomic software used on PAPPSO Package: xtandempipeline Version: 3.4.3-2 Architecture: all Maintainer: Olivier Langella Installed-Size: 3078 Depends: libswt-cairo-gtk-3-jni, icedtea-netx, openjdk-6-jre (>= 1.6) | openjdk-7-jre (>= 1.7), libswt-gtk-3.5-java | libswt-gtk-3.6-java | libswt-gtk-3-java, libbatik-java (>= 1.7), libswt-mozilla-gtk-3.5-jni | libswt-webkit-gtk-3.6-jni | libswt-webkit-gtk-3-jni, tandem-mass, liblog4j1.2-java (>= 1.2.15), libcommons-httpclient-java (>= 3.1), libcommons-codec-java (>= 1.4), libcommons-logging-java (>= 1.1.1), libwebkitgtk-1.0-0 Conflicts: xtandem-cyclone, xtandemparser (<< 2.9.8-2~) Replaces: xtandemparser (<< 2.9.8-2~) Homepage: http://pappso.inra.fr/ Priority: optional Section: main/science Filename: pool/main/x/xtandempipeline/xtandempipeline_3.4.3-2_all.deb Size: 2729394 SHA256: 5a96376411ef0476f6e72f20910a85dae3da69786b162783bff8c3463ef585c8 SHA1: cab0c93f1a8f0d9074462945d96a60248bbfec14 MD5sum: b006dbcc004ea294338a9e729d1ec717 Description: loads and parses the xml results product by X!Tandem This Java application loads and parses the xml results product by X!Tandem, applies filters on E-value at peptide and protein levels, filters proteins on the basis of a minimum number of unique peptides, removes proteins specified in a contaminant database... Package: xtandempipeline-doc Source: xtandempipeline Version: 3.4.3-2 Architecture: all Maintainer: Olivier Langella Installed-Size: 2725 Suggests: xtandempipeline Homepage: http://pappso.inra.fr/ Priority: optional Section: main/science Filename: pool/main/x/xtandempipeline/xtandempipeline-doc_3.4.3-2_all.deb Size: 2763142 SHA256: 08fc2a0f1cb3347df842d2de6a00f98b5f39ca7c5b6bc1b4c0a82e56cf57d745 SHA1: 793a011d2730e765a06647299f83a11b1b50ad1c MD5sum: 0f32e0ec3f0f4772850c20076bc8d965 Description: X!TandemPipeline documentation Installs PDF documentation for X!TandemPipeline in /usr/share/doc/xtandempipeline-doc